Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F13
         (954 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
 Frame = +2

Query: 857 PGPPPP---GXTXPXRGXXPXP---PPPXGEXXPXTPP 952
           PGP P        P RG  P P   PPP G   P  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGG--PPGAPP 56



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = +2

Query: 548 GYPKXGGIPHXTTXKXKPXKXGXPKXXPPPTXXP*APP 661
           G P     PH +    +      P   PPP   P APP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 12/44 (27%), Positives = 12/44 (27%)
 Frame = +2

Query: 746 PXXNPQXPPPXXXXPXKXPXXPXXGXXPPPGXXXXXXPGPPPPG 877
           P    Q   P    P   P        P  G       GPPP G
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.150    0.536 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,147
Number of Sequences: 438
Number of extensions: 7584
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)