Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F12
(872 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 109 5e-25
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual 32 0.12
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 29 0.65
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha... 27 2.6
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 3.5
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S... 27 4.6
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 26 6.1
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 8.1
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 26 8.1
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 109 bits (262), Expect = 5e-25
Identities = 47/64 (73%), Positives = 57/64 (89%)
Frame = +1
Query: 457 LFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 636
LFE++LA+NYLDIK LLD CKTVANMI+GK+PE+IRKTFNI NDFT EE+Q+RKENEW
Sbjct: 98 LFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEW 157
Query: 637 CEEK 648
E++
Sbjct: 158 AEDR 161
Score = 72.5 bits (170), Expect = 7e-14
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +3
Query: 162 MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQW 341
M IKL SSDNE FVVD IA+ S+ IK PLPNV+S +L+KV++W
Sbjct: 1 MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57
Query: 342 ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQ 449
+HK+D E+ + + K++ DI WD F+ VDQ
Sbjct: 58 CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQ 95
>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 97
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 171 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 350
++L S D VF+++ EIA S TI+ P++ + +L+KV ++ Y
Sbjct: 6 VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65
Query: 351 ---HKDDPPLPEDD 383
+K+ +P+ D
Sbjct: 66 NYRYKNQLDIPKFD 79
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 29.5 bits (63), Expect = 0.65
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 366 PLPEDDENKEKRTDDISSWDADFLKVDQG 452
P+P D NK T D+SSW+ D+ + G
Sbjct: 9 PIPRSDSNK---TSDVSSWEEDYELISLG 34
>SPAC6B12.11 |drc1|sld1|DNA replication protein
Drc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 505 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFTAAEEDQV 618
L VT KTV + G TP+ R+ N+ D + + V
Sbjct: 96 LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMSPIADSHV 133
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +1
Query: 97 HFRLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKSPNA 231
+F+LK ++L+ + ++L K+ N+Q+T + + + KSPNA
Sbjct: 31 NFKLKSPSYYLLNSFKLLVKSEG-----NNQSTTADVTLTKSPNA 70
>SPAC227.07c |pab1||protein phosphatase regulatory subunit
Pab1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -2
Query: 115 LSSNENALMFWRFFLKPKQ*INESNLKDS 29
LS+N+ + W+ + K + + E+NL DS
Sbjct: 108 LSTNDKTIKLWKLYEKNLKVVAENNLSDS 136
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 103 RLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKS 222
+LKI V + ILEK ++ C+H+ S L L S
Sbjct: 208 KLKIENNSRSVKLSILEKALKEVKGCDHEILVSYYLQLGS 247
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 339 WATYHKDDPPLPEDDENKEKRTDDISSWDADF-LKVDQGHT 458
W+ DDPP +EN ++ D S+ F ++ +GHT
Sbjct: 537 WSLPCLDDPPFVNVNENPDQNNDFTSATTNPFYIRTLRGHT 577
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 337 SGLLIIKTILRYQKMTKTRKRGLMTYHHGMLIF*KLTKGTLFELILAANYLDIKGLLDVT 516
S + +++T+ Y K+ R + GML + +++LIL A + GL V
Sbjct: 715 SSVTLLETLDDYGKLLAHFSRLAPEFQTGMLDMFRTLNSRVYQLILGAGTVRSSGLSKVL 774
Query: 517 CKTVA 531
K +A
Sbjct: 775 GKHIA 779
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,257
Number of Sequences: 5004
Number of extensions: 54612
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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