Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F06
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 31 0.28
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi... 29 1.1
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 29 1.1
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 28 2.0
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 2.6
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 3.5
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 4.6
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 26 6.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 26 8.0
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 26 8.0
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 205 FHSKLFFKMELTRPWHSIKQISRLKFCLISAKIRVPVRQYVVLLTNKRL-LQCSCAMKFP 381
F+ L FK + P++SI + + FC + + + + NK L L+CSC + FP
Sbjct: 134 FYGILNFKGH-SEPFYSISE--KYSFCNLKTSALILSKAASASIGNKGLFLKCSCKVGFP 190
Query: 382 FTY 390
F++
Sbjct: 191 FSF 193
>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
Tom20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 352 LQCSCAMKFPFTYNYSSENKKHFITLEKKALKNAFEHKKEQLKHTEHKLRLKGEEIVR 525
L + A+ + ++Y N HF K+ K E KK++ K K + EE ++
Sbjct: 10 LLATAAVGYAIYFDYKRRNDPHFRKTLKRRYKKVHEAKKQEEKLATKKFDITVEEALQ 67
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.7 bits (61), Expect = 1.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 647 KENVFTIPNILCITRIAMSP 706
+EN+FT+PN+L +R+ +P
Sbjct: 395 RENIFTLPNLLTFSRLLSAP 414
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 442 LKNAFEHKKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEHIIKDILE 603
L ++ +EQLK+++ L EI +++H+ +V +KL ++ IL+
Sbjct: 93 LISSIHRSEEQLKNSKQSLIGHSTEIQNNLKHKQDVENEKLIASNLLLLDQILK 146
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 27.5 bits (58), Expect = 2.6
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Frame = +1
Query: 412 KHFITLEKKALKNAFEHKKEQLKHTEHKLRLKGEEIVRDIRHQGEVT-GQKLRVKKEHII 588
KHF T EK ALK + + E K T +L+ + I+R + H +T Q RV K ++
Sbjct: 41 KHFQTNEKVALKMVYNDELED-KDTWKRLQ-REVTILRQLHHPNIITLYQVFRVPKYTVL 98
Query: 589 K-DILET---KAKVKERFXXXCXERKCLHYPKH 675
+ ++T VK C RK H
Sbjct: 99 ALEYMDTDLHSMVVKHNRLDECTTRKIFRQIVH 131
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 209 WNKS*NGYWI*I*LIILCFVTISNYKNNQNILAQLSKFDVLLLTGW-HCNLII 54
W +G WI + + +LCFV + + + +S V+ + G+ C ++I
Sbjct: 190 WININSGIWITVFIALLCFVNMFGVRGYGEVEFFVSSLKVMAMVGFIICGIVI 242
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 427 LEKKALKNAFEHKKEQLKHTEHKLRLKGEEIVRDIRHQGEVTGQKLRVKKEHIIK 591
+E+ + FE +KE+ T + K EEI +R + E KLR +K+ ++
Sbjct: 165 IEEASGTRMFEERKEKAFRTMQRKEAKVEEINTLLREEIEPRLTKLRTEKKTFLE 219
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/85 (22%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 379 PFTYNYSSENKKHFITLEKKALKNAFEHKKEQLKHTEHKLRLKGEEI-VRDIRHQGEVTG 555
P T + E KK+ +++ + ++ E K + L+H KL K ++ ++ + + E+
Sbjct: 134 PITSSNQKEGKKNVSSIDVSMVSDSSEFKPDSLQH--EKLVKKCNQLRLQKLINSSELAQ 191
Query: 556 QKLRVKKEHI-IKDILETKAKVKER 627
L + K + + +LE +K++E+
Sbjct: 192 IDLELSKLYSRRRQVLERLSKIEEQ 216
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 262 QISRLKFCLISAKIRVPVRQYVVLLTNKRLLQCSCAMKFPFTYNYSSENKKHFITLEKKA 441
+ +LK L S +I + + Y LL K LLQ CA F F + + +H + + A
Sbjct: 399 EAEKLKKHLSSFQIYLKPKDY--LLDPKPLLQLICASFFGFPVGFVNAVTRHIPSPRENA 456
Query: 442 LKNA 453
+ A
Sbjct: 457 ARKA 460
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 8.0
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 388 YNYSSENKKH-FITLEKKALKNAFEHKKEQLKHTEHKLRLKGE-EIVRDIRHQGEVTGQK 561
Y S + KH + TL +A N F+HK+ ++H + R K E + I+ Q + +
Sbjct: 109 YRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQ---RAKAEANRTKLIQEQQDARRAR 165
Query: 562 LRVKKEHIIKDILETKAKV 618
+ ++ K + E + ++
Sbjct: 166 AKAARQRRAKAVEEKREQI 184
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,434
Number of Sequences: 5004
Number of extensions: 52143
Number of successful extensions: 127
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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