Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F06
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    25   0.91 
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    25   0.91 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    24   1.6  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  LLSGCNATRSKAKHQTSKVV 112
           L +GCN    K KH  +KVV
Sbjct: 68  LSTGCNKCNEKQKHTANKVV 87


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 53  LLSGCNATRSKAKHQTSKVV 112
           L +GCN    K KH  +KVV
Sbjct: 68  LSTGCNKCNEKQKHTANKVV 87


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 382 FTYNYSSENKKHFITLEKKALKNAFEHKKEQLKHTEHKLRL 504
           FTY++   N K   +LE+ A +NA +           KLRL
Sbjct: 24  FTYSHGWTNGKRSTSLEELANRNAIQSDNVFANCELQKLRL 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,877
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)