Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F04
         (920 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           29   0.26 
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   2.4  
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            23   9.8  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 0.26
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 147 GQPQPRGNPAGGVTQGSRNDRRAYEFQQRQ 236
           GQ    G PAGG  Q S++  + Y+ QQ+Q
Sbjct: 387 GQSAQAGGPAGGQAQPSQSAAQQYQPQQQQ 416


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 143 KRSTTTAWQSRWWCDARQQERS 208
           +++T   WQ  W  DA QQ+ S
Sbjct: 930 RQNTIDCWQEEWDADALQQDAS 951


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -2

Query: 193 PCVTPPAGLPRGCG*PLPKTLGLG 122
           P    P G P G   PLP  LG G
Sbjct: 597 PLAGGPLGGPAGSRPPLPNLLGFG 620


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,859
Number of Sequences: 2352
Number of extensions: 7145
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 100055142
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)