Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_F02
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    29   1.2  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   4.8  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    26   8.4  
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    26   8.4  

>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -1

Query: 209 ESKGTXRTXTMXMXRTSEXRTXVEEKEHQGTEKXTKGKDGRKLALQRERXXLKKAKMKEG 30
           +SK    T +    +  E  T  ++KEH+  +K +  K  +  +  +E    KK K+K+ 
Sbjct: 176 KSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLKDK 235

Query: 29  P 27
           P
Sbjct: 236 P 236


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 286 YLTTVXQRNTPAYTTWLGSSNPS 354
           YL     +N  AYT WL SSN S
Sbjct: 317 YLIPGTSKNWEAYTAWLTSSNDS 339


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 135 KRTPRNXEXDEGERRKKTCTAAREXXIEKSK 43
           K  P     D G+  +KT  AARE  I+K K
Sbjct: 169 KMKPPTYHFDSGDLFRKTDPAARESFIKKQK 199


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 444 KVRLNNNIIN*DGITSGLQNDERLLDCFPATG 349
           + RL   ++  DG   G Q  + LL CF +TG
Sbjct: 118 EARLAQKVLEEDGSQQGSQLIQGLLTCFQSTG 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,667
Number of Sequences: 5004
Number of extensions: 33886
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)