Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_F01
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 28 2.0
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 27 3.5
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 3.5
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 27 3.5
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 6.1
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 26 6.1
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 26 8.0
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 26 8.0
SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 8.0
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 8.0
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 402 LQLRILLQCYKKLCEYFMGTEVY-----KTLLDEDEVAASVNGGTVASSGLIDLIQEGAG 566
L L +L C + Y E++ KT ++ + +N +A +GL DL+Q+ A
Sbjct: 504 LMLNVLDSCTNYVGRYTFLNELFEYLQEKTTYYKNNLTTLLNNDYIAQAGLSDLLQKIAD 563
Query: 567 FSDD 578
+DD
Sbjct: 564 TTDD 567
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = -1
Query: 625 GNMLYADFERPPVLL*SSENPAPS*IKSIKPELA-TVPPFTL--AATSSSSNNVLYTSVP 455
G L FER L +E PA + +K K + A T PP T ++ SS+S +V ++ P
Sbjct: 176 GKALQEVFERQLKQLPDAEQPAAAPVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAP 235
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 165 RLIILADPADKSTWTDLF 218
R+ IL+DPAD +T+TD F
Sbjct: 137 RVTILSDPADYATFTDKF 154
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.5
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 447 YFMGTEVYKTLLDEDEVAASVNGGTVASSGLI 542
Y++ T +YK L+ +N T+++SG++
Sbjct: 471 YYLDTRMYKVCLNFTTTQKDINHATISNSGIL 502
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 802 HCFSFDCDFIPRASIHYRIHGDPFAVDLELG 710
HC + CD +P + +HG PF + +E G
Sbjct: 30 HCKA--CDSLPGGNTRTVLHGAPFPIFIEAG 58
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 558 LPELNLLSLSWPLYPHS 508
LP+LN+ + +WPL P+S
Sbjct: 240 LPKLNVKNSAWPLQPYS 256
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 617 HITMCIHKFSINTNPTWDLVQVAR 688
H + +FS NT P+WD Q R
Sbjct: 275 HFALVHSRFSTNTFPSWDRAQPMR 298
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 363 CSWCKDYENYTENLQLRILLQCYKKLCE 446
C C+ N++L I +CY K+CE
Sbjct: 13 CPLCQADRYLNPNMKLLINPECYHKMCE 40
>SPAC513.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 25.8 bits (54), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 50 CLRLSFVSFLLKSTKLTXMP*FIANFQN 133
CL ++F++ L T + MP FIA +N
Sbjct: 21 CLMVTFLNVQLSKTPIVLMPLFIALLKN 48
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 8.0
Identities = 7/23 (30%), Positives = 15/23 (65%)
Frame = -2
Query: 666 HVGFVLMLNLCIHMVICYMLTSK 598
H+ +V++ C++ ++ YM SK
Sbjct: 295 HLAYVIVAGFCLYFILSYMFFSK 317
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,105
Number of Sequences: 5004
Number of extensions: 69319
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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