Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E24
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    36   0.006
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    36   0.008
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    31   0.22 
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    26   6.1  

>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 36.3 bits (80), Expect = 0.006
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
 Frame = +1

Query: 445 ISNTEISWMLGLNPIGFLIGSFTARFVIDKFGRRYTLLASMXXXXXXXXXXXXXTRGWML 624
           +S+     + G+  +G L G   +  + D+FG+R +++                   W+ 
Sbjct: 57  LSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQ 116

Query: 625 MMTQFLWS-FGTAILCTVQGIYFAEIADKDIRGTL 726
           +M   +W+  G   L  +   Y +E A   IRGT+
Sbjct: 117 IMVAKIWTGIGIGALSVLAPGYQSETAPPSIRGTV 151


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 21/94 (22%), Positives = 40/94 (42%)
 Frame = +1

Query: 445 ISNTEISWMLGLNPIGFLIGSFTARFVIDKFGRRYTLLASMXXXXXXXXXXXXXTRGWML 624
           ++N    ++     +G L+G   A  + D FGR+  +  +                 W +
Sbjct: 124 LTNGGKEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHM 183

Query: 625 MMTQFLWSFGTAILCTVQGIYFAEIADKDIRGTL 726
           ++ +F+  +G  I   +  +Y +EIA   IRG L
Sbjct: 184 IVGRFVIGWGVGIASLIIPLYLSEIAPSKIRGRL 217


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +1

Query: 475 GLNPIGFLIGSFTARFVIDKFGRRYTLLASMXXXXXXXXXXXXXTRGWMLMMTQFLWS-F 651
           G+  +G   G   +    D+ G+R +++                   W+ +M   +W+  
Sbjct: 63  GMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQVTAVPSWVQIMVAKIWTGL 122

Query: 652 GTAILCTVQGIYFAEIADKDIRGTL 726
           G   L  +   Y +E+A   IRGT+
Sbjct: 123 GIGALSVLAPGYQSEVAPPHIRGTI 147


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 579 RWNGHSRICYKRLDAYDDAILVELW 653
           +WN  SR+ +K+ D  D A++   W
Sbjct: 214 KWNNGSRVEFKKDDMADSALIASGW 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,452,877
Number of Sequences: 5004
Number of extensions: 70808
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)