Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E24
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical pr...    33   0.27 
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    32   0.62 
AC024843-10|AAF60845.2|  526|Caenorhabditis elegans Hypothetical...    30   1.9  
Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U28735-4|AAF99953.1|  488|Caenorhabditis elegans Hypothetical
           protein F48E3.2 protein.
          Length = 488

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = +1

Query: 379 GACSAWPTPVLLKFHN--NETS---VVISNTEISW----MLGLNPIGFLIGSFTARFVID 531
           G  +A+P   +  F    NE++     +SN+E  W    ML +  IGF  GS  +  V D
Sbjct: 24  GYTNAYPNTAIGSFRIFLNESANEPYTLSNSEFEWAWSAMLAIYFIGFAAGSVISAGVAD 83

Query: 532 KFGRRYTL 555
           + GR++TL
Sbjct: 84  RIGRKWTL 91


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 487 IGFLIGSFTARFVIDKFGRRYTLL 558
           +G + GSF + F+ DKFGR+ TLL
Sbjct: 109 VGGMFGSFCSGFLADKFGRKSTLL 132


>AC024843-10|AAF60845.2|  526|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.1 protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
 Frame = +1

Query: 448 SNTEISWMLGLN---PIGFLIGSFTARFVIDKFGRRYT-LLAS---MXXXXXXXXXXXXX 606
           S   + W L LN   PI  + G F A ++  +FGR++T L+AS   +             
Sbjct: 86  STLHLLWSL-LNVCFPIATIFGQFLAGWMCSQFGRKHTALIASFLYIPGALLCAAAKWCF 144

Query: 607 TRGWMLMMTQFLWSFGTAILCTVQGIYFAEIADKDIRGTLS 729
               +L + + +WS    +      ++  E A   IRG ++
Sbjct: 145 PAFELLFVGRIIWSLANGVNTVNATVWIVECAPPQIRGRMA 185


>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 487 IGFLIGSFTARFVIDKFGRRYTLLASM 567
           IG L+G+    F+ DK+GRR   L+S+
Sbjct: 124 IGTLLGNIALGFLADKYGRRTIYLSSL 150


>Z99270-1|CAB16470.4|  500|Caenorhabditis elegans Hypothetical
           protein Y37A1A.3 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
 Frame = +1

Query: 415 KFHNNETSVVISNTEISW--MLGLNPIGFLIGSFTARFVIDKFGRRYTLLASM---XXXX 579
           K  NN     +S+ E  W  ++ +  +G   G+F  + V ++FGR+  ++ S+       
Sbjct: 61  KHSNNPDDNELSHLENEWSFIVAIFFLGSATGAFLIKTVAERFGRKKGVIVSLFAQVTSS 120

Query: 580 XXXXXXXXXTRGWMLMMTQFLWSFGTAILCTVQGIYFAEIADKDIRGTLSL 732
                        + +  +FL   G  I   +  ++  E +    RG  SL
Sbjct: 121 MLTIVSFWIVNHILFIFARFLMGVGITISMGIAAMFVTESSPAYCRGVSSL 171


>U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical
           protein F53H8.3 protein.
          Length = 569

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 394 WPTPVLLKFHNNETSVVISNTEISWMLGLNPIGFLIGSFTARFVIDKFGRR 546
           W     +  +    S+ +SN   S+++    IG ++G+   R + +K+GRR
Sbjct: 37  WINQTYIDRYKAPLSLTVSNVIWSFVVSSIAIGAILGASFTRIIGEKYGRR 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,749,422
Number of Sequences: 27780
Number of extensions: 383832
Number of successful extensions: 830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)