Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E23
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   8.1  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   8.1  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   8.1  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    26   8.1  

>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 351 HPGFNFAVITRSCPHTI 301
           HP  N  ++T  CPHT+
Sbjct: 318 HPALNAILVTPVCPHTL 334


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 597 DKGHISPQCEQRPMSL 644
           + GH+S QCEQ P  L
Sbjct: 131 ENGHLSGQCEQNPKGL 146


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +2

Query: 314 QDRVITAKLNPGCAECTSANTLVYIKADSSKDSIHQLWDFTGGDPYCGVCTNRTE 478
           QDR +   LNP       +   +Y   +  K+ +H  +     D + G+  N T+
Sbjct: 58  QDRQLIEPLNPDFLSAVDSILEIYFHRERQKEKVHLAFLIQQDDFWKGIRPNPTQ 112


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 468 TELNSTMQVKWDRQVPVKFLLSETPKYCFAIAIDKLYE 581
           TE++ T QV  + +V ++  L +TP Y   I  DK +E
Sbjct: 74  TEIHVTSQVVRENRVQLQLNLIDTPGYGDQINNDKCWE 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,654
Number of Sequences: 5004
Number of extensions: 73442
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)