Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E23
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930... 31 0.91
02_03_0077 + 14874273-14874571,14875304-14876150,14876878-148771... 31 1.6
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 30 2.1
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 30 2.8
03_04_0242 - 19238016-19238679,19239487-19239929 29 4.9
02_03_0330 + 17823726-17824068,17824307-17825340 29 4.9
04_04_0626 - 26686411-26686518,26686876-26686953,26687763-266878... 29 6.4
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599... 28 8.5
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 28 8.5
01_01_0507 - 3704314-3704449,3705038-3705094,3705219-3705297,370... 28 8.5
>11_04_0162 +
14291835-14292281,14292330-14292697,14292836-14293050,
14293090-14294129
Length = 689
Score = 31.5 bits (68), Expect = 0.91
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 27 RESLRFEFEPTTDLC*SIVKVKYCNDKVNYRV 122
R+ RFEF+P T+ C S+VK+KY + N +V
Sbjct: 577 RKEERFEFQPRTEQC-SMVKIKYRPNPQNIQV 607
>02_03_0077 +
14874273-14874571,14875304-14876150,14876878-14877147,
14877313-14878065
Length = 722
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 39 RFEFEPTTDLC*SIVKVKYCNDKVNYRV 122
+FEF+P T+ C S+V++KY + NY+V
Sbjct: 296 KFEFQPRTEQC-SMVRIKYGSYPQNYQV 322
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 39 RFEFEPTTDLC*SIVKVKYCNDKVNYRV 122
RFEF+P T+ C S+V++KY ++ N +V
Sbjct: 501 RFEFQPRTEQC-SMVRIKYGSNPQNIQV 527
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 425 WDFTGGDPYCGVCTNRTELDDA 490
W+ TGGDP G + T +DD+
Sbjct: 60 WNITGGDPCTGTAVDDTNIDDS 81
>03_04_0242 - 19238016-19238679,19239487-19239929
Length = 368
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 39 RFEFEPTTDLC*SIVKVKYCNDKVNYRV 122
+FEF+P T+ C S+VK+KY + N +V
Sbjct: 260 KFEFQPRTEQC-SMVKIKYGPNPQNIQV 286
>02_03_0330 + 17823726-17824068,17824307-17825340
Length = 458
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 39 RFEFEPTTDLC*SIVKVKYCNDKVNYRV 122
RFEF+P T+ C S+V++KY + N +V
Sbjct: 402 RFEFQPRTEQC-SMVRIKYGPNPQNIQV 428
>04_04_0626 -
26686411-26686518,26686876-26686953,26687763-26687810,
26688012-26688167,26688725-26688795,26689949-26690055,
26690145-26691112
Length = 511
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 629 EADVSQVYVVDPGRQRALRQGGD-GSSPRVNISTAGEL 739
E + VYV P +R+G + GSSPR ++S G L
Sbjct: 393 ERKLKVVYVQPPRPPSPVREGSEEGSSPRASLSEGGNL 430
>08_01_0683 +
5991905-5992055,5993262-5993451,5993701-5993772,
5994016-5994084,5994189-5994260,5994440-5994511,
5994623-5994694,5994777-5994848,5995276-5995347,
5995452-5995526,5995929-5996005,5996417-5996781,
5996872-5997070,5997151-5997309,5997391-5997509,
5997624-5997641,5997701-5997851,5997959-5998190,
5998272-5998422,5998517-5998876
Length = 915
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 425 WDFTGGDPYCGVCTNRTELDD 487
W+ TGGDP G + T++D+
Sbjct: 69 WNITGGDPCTGTAVDDTDIDN 89
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -3
Query: 785 RSRRTGMRSNLTSTTPARQLCLY*PVDSNHHLLVGEHAVDQGPRHILERHRPLFALRA 612
R +R GM+ N+T+ T A + C+ N L + H ++ H L+ + P +LRA
Sbjct: 551 RMQRVGMKLNVTAYTVAIKACV-----ENKDLKLALHLFEEMKAHQLKPNLPTESLRA 603
>01_01_0507 -
3704314-3704449,3705038-3705094,3705219-3705297,
3705380-3705486,3705833-3705949,3706077-3706165,
3706668-3706721,3706800-3706866,3706971-3707128,
3707318-3707386,3707481-3707618,3707706-3707740,
3707829-3707952
Length = 409
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = -3
Query: 686 VGEHAVDQGPRHILERHRPLFALRADVALILHIIVFV 576
VG+H P H F L AD AL+ I+VFV
Sbjct: 4 VGKHGESSPPSDRRPLHFAAFLLLADAALVALIVVFV 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,507,185
Number of Sequences: 37544
Number of extensions: 498656
Number of successful extensions: 1282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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