Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E23
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    27   0.30 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    27   0.30 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   8.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   8.5  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 788 PRSRRTGMRSNLTSTTPARQLCLY*PVDSNHHLLVGEH 675
           P S   G  SNL ST+P+ Q     P   NH L   +H
Sbjct: 71  PGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKH 108


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -3

Query: 788 PRSRRTGMRSNLTSTTPARQLCLY*PVDSNHHLLVGEH 675
           P S   G  SNL ST+P+ Q     P   NH L   +H
Sbjct: 71  PGSFTAGCHSNLLSTSPSGQNKAVAPYPPNHPLSGSKH 108


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 568 TSSTNTMMWRIRATSARSANRGRCLSSICRGPWSTACSPTRR*WFESTGQYKHS 729
           +++ N +++ I +   R A +   +   C G WS+  S  RR  + S  +Y  S
Sbjct: 340 STTVNPLLYNIMSNKFREAFK--LMLPNCCGKWSSQKSEPRRSIYSSLLRYPRS 391


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 498 ISLASSSSVRLVQTPQ*GSPPVKSHS 421
           +S++  + +  V++P   SPP  SHS
Sbjct: 453 LSVSGEAGIEEVKSPVLRSPPAFSHS 478


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 498 ISLASSSSVRLVQTPQ*GSPPVKSHS 421
           +S++  + +  V++P   SPP  SHS
Sbjct: 453 LSVSGEAGIEEVKSPVLRSPPAFSHS 478


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 315 CPHTIDIALLNNKIKKFI 262
           CP+T+D A+  N I  FI
Sbjct: 562 CPYTVDAAIYGN-ISHFI 578


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 175 FYLLFTYFKTRSGSITEKYSCKL 243
           F ++FTY+K    ++ +  S KL
Sbjct: 220 FVMVFTYYKIYRAAVIQTKSLKL 242


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 458 HHSRDPPL*SPIAGGCCP 405
           H S  P L + +AGG CP
Sbjct: 520 HASSAPLLAATLAGGLCP 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,402
Number of Sequences: 438
Number of extensions: 4798
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)