Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E21
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme Rad31|Schiz...    28   2.0  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   6.2  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.2  

>SPAC4C5.04 |rad31|uba4|SUMO E1-like activator enzyme
           Rad31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 578 TLKSEVAKPDRTIKIPGVSPLESSLVRSPVPDPAALPDTCPPFLLRXSVALSHSSPCRYL 757
           ++  E  KP    KIP + P   SL++S   DP ++   C    L     L+     ++ 
Sbjct: 197 SILGETLKPRLAKKIPTLYPAMLSLLKSKKSDPDSIRQVCIEQKLNEKTVLNGEFLSKFS 256

Query: 758 SSV 766
           S++
Sbjct: 257 SNI 259


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 560 RASQKSTLKSEVAKPDRTIKIPGVSPLESSLVRSPVPDPAALPD 691
           R  + S +K   A   RTI + GV+P ES L   P P    +PD
Sbjct: 505 RLERTSPVKELPAIRPRTIPLNGVAPYESEL--RPPPKWKPMPD 546


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 623 PGVSPLESSLVRS--PVPDPAALPDTCPPFL 709
           P + PL ++   S  PVP P +LP + PP L
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSL 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,501
Number of Sequences: 5004
Number of extensions: 60001
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)