Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E21
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 31 1.6
06_01_0817 - 6185881-6187074 30 2.1
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 30 2.8
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625... 29 5.0
02_02_0691 + 12999452-12999820 29 5.0
06_01_0438 + 3110703-3111945,3112486-3113057 29 6.6
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343 29 6.6
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 8.7
05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546... 28 8.7
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 579 RSSQRWRNPTGL*RYQAFPPWKAPSCAL 662
RS +RWR+ + + AF APSCAL
Sbjct: 321 RSRRRWRHAAAISSFSAFVAENAPSCAL 348
>06_01_0817 - 6185881-6187074
Length = 397
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 608 RTIKIPGVS-PLESS-LVRSPVPDPAALPDTCPPF 706
R I++P ++ P ++ +V SPVP P +P PPF
Sbjct: 58 RPIRMPAINAPTNTAAIVLSPVPQPLPVPPASPPF 92
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 599 KPDRTIKIPGVSPLESSLVRSPVPDPAALP 688
+P R + IPG P ++++ +PVP P +P
Sbjct: 54 RPRRALPIPGRGPPPAAVLHAPVPVPVQVP 83
>06_03_1186 -
28260487-28262112,28262205-28262345,28262429-28262573,
28262964-28263067,28263324-28263456,28263904-28264013,
28265144-28265167
Length = 760
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 560 RASQKSTLKSEVAKPDRTIKIPGVSPLESSLVRSPVPDPAALPDTCP 700
+A ++S K + P R I +PG S V+ P + PD CP
Sbjct: 690 KAEEQSEQKGSMHPPGRAISLPGESVCRDEDVKFPARSTSLQPD-CP 735
>02_02_0691 + 12999452-12999820
Length = 122
Score = 29.1 bits (62), Expect = 5.0
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = +1
Query: 493 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPPGKLPRALSCSR 672
S+ P +PR WR ++GS I+ A RGG R + + RR G L A+ R
Sbjct: 12 SEAPVVAPKPRGWRMAVGSIGGGGISPPVA--RGGR-RGERERGRRSAGGGLTGAVDAFR 68
Query: 673 PCRXTG 690
P G
Sbjct: 69 PAGEAG 74
>06_01_0438 + 3110703-3111945,3112486-3113057
Length = 604
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 162 HCILVVVCPNSSMYLIMSGSN*PSXKGRSAAAVP 61
HC + +VC +S+ L++S P+ ++AA+P
Sbjct: 64 HCFVEIVCADSAGRLLLSAKPRPAPAATTSAALP 97
>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
Length = 356
Score = 28.7 bits (61), Expect = 6.6
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Frame = +1
Query: 358 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 513
P PRS RC GCG R Q TQR P N IT E TC ++ P +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = +1
Query: 307 NESAN---ARGEAVCVLGALPLPRSLTRCAR 390
+ESAN AR EAV +G +P+ L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464
>05_06_0057 +
25253497-25253589,25253722-25253799,25254583-25254621,
25254724-25255263,25255352-25255450,25255614-25255691,
25255961-25256146,25256240-25256365
Length = 412
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 623 PGVSPLESSLV-RSPVPD-PAALPDTCPPFLLRXSVALSHSSPCRY 754
PG +P S L + P+P+ P LP+ PP L + + L+ CRY
Sbjct: 251 PGGNPQTSFLTGQPPLPNQPPPLPNQPPPQLYQITRVLALEVSCRY 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,411,940
Number of Sequences: 37544
Number of extensions: 482322
Number of successful extensions: 1324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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