Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E20
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    74   3e-14
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    73   5e-14
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    69   6e-13
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.4  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.8  
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   7.6  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 73.7 bits (173), Expect = 3e-14
 Identities = 31/53 (58%), Positives = 47/53 (88%)
 Frame = +3

Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 299
           L  +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG EK
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEK 61


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 30/53 (56%), Positives = 46/53 (86%)
 Frame = +3

Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 299
           L  +GGK +P+A+D+E +LS+VGIEA++E+++ +I ELNGKD+++LIAAG EK
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEK 61


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 69.3 bits (162), Expect = 6e-13
 Identities = 28/53 (52%), Positives = 46/53 (86%)
 Frame = +3

Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 299
           L  +GGK +P+A+D+E +LS+VGIE+++E+++ +I EL+GKD+++LIAAG EK
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEK 61


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -2

Query: 253 SSVITFLSFSASASIP--TELRIFSTSAAAGVVLPPSTA 143
           SSV T LS SAS+SIP  +     STS ++  V+P S++
Sbjct: 8   SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSS 46


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -2

Query: 301 AFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGVVLPPSTAK*IRGHV 122
           +F  P+A +   S P+SS+ +F + SA+++ P+     + S  A    P +T+  I    
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKE 510

Query: 121 THFLSPN 101
               SPN
Sbjct: 511 KPARSPN 517


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 183  VEKILSSVGIEADAEKLKKVITELNG 260
            V++I   VG+E D+E  K  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 305 TSLLTSGRNKLFNILAVELRDYFL 234
           TS+L +    LFN++ V  R+YFL
Sbjct: 104 TSILRTIDTSLFNVIVVSPRNYFL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,201,837
Number of Sequences: 5004
Number of extensions: 20271
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)