Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E20
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 70 2e-12
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 57 2e-08
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 56 5e-08
07_01_1001 - 8460467-8460799 48 9e-06
07_03_0321 + 16757414-16757743 47 2e-05
01_06_0098 - 26416768-26416998 32 0.65
07_03_0583 - 19684388-19684498,19685083-19685216,19685765-196858... 29 3.5
05_02_0121 - 6834843-6835127 29 4.6
01_03_0276 - 14489847-14489921,14490144-14490240,14491480-144915... 29 6.1
09_04_0360 - 16944990-16945202,16945288-16945377,16945525-169457... 28 8.0
07_03_1321 - 25794146-25794904 28 8.0
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 8.0
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 70.1 bits (164), Expect = 2e-12
Identities = 31/53 (58%), Positives = 45/53 (84%)
Frame = +3
Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 299
LAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK
Sbjct: 9 LAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREK 61
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/70 (41%), Positives = 43/70 (61%)
Frame = +3
Query: 90 FLCQLGLKKCVTWPRIYLAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDV 269
F C L K ++ LA L G P+A D+ IL SVG E D K++ ++++L GKD+
Sbjct: 187 FFCDLLRMKFIS--AYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDI 244
Query: 270 EQLIAAGREK 299
++IA+GREK
Sbjct: 245 TEIIASGREK 254
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 55.6 bits (128), Expect = 5e-08
Identities = 24/53 (45%), Positives = 38/53 (71%)
Frame = +3
Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGREK 299
+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA GREK
Sbjct: 9 MAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREK 61
>07_01_1001 - 8460467-8460799
Length = 110
Score = 48.0 bits (109), Expect = 9e-06
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 296
+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60
>07_03_0321 + 16757414-16757743
Length = 109
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/52 (38%), Positives = 33/52 (63%)
Frame = +3
Query: 141 LAVLGGKTTPAAADVEKILSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 296
+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++AAG E
Sbjct: 9 MATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.9 bits (69), Expect = 0.65
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 168 PAAADVEKILSSVGIEADAEKLKKVITELNGKD 266
P V KI+ +V IEAD+ + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>07_03_0583 -
19684388-19684498,19685083-19685216,19685765-19685888,
19685982-19686251,19686961-19687155,19687236-19687328,
19687411-19687539,19687646-19689277
Length = 895
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 173 SWRGLATQHSQVNTRPRNAFFK 108
SW+GL ++SQ N RP FF+
Sbjct: 863 SWKGLIDRYSQANLRPEILFFE 884
>05_02_0121 - 6834843-6835127
Length = 94
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 210 IEADAEKLKKVITELNGKDVEQLIAAGREKACRQ 311
+EADA + K V+ L GKD A+ E+ R+
Sbjct: 17 VEADAAEFKSVVQSLTGKDSTAATASPEEEGSRR 50
>01_03_0276 -
14489847-14489921,14490144-14490240,14491480-14491546,
14491748-14491877,14491995-14492152,14493004-14493235,
14493760-14493895,14493982-14494085,14495709-14495987
Length = 425
Score = 28.7 bits (61), Expect = 6.1
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +3
Query: 75 FWHYTFLCQLGLKKCVTWPRIYLAVLGGKTTPAAADVEKILSSVGIE-ADAEKLKKVITE 251
F++ G+ T PR+ LAV GG P D+ + + + I L +
Sbjct: 205 FFYVALTAAAGISTFFTIPRLILAVQGGDGAP---DLLETVGNAAINIGGIVVLVALYFW 261
Query: 252 LNGKDVEQLIAAGREKACRQLPVR 323
N K+ +Q+ R + +LPVR
Sbjct: 262 ENKKEEQQITQISRNETLSRLPVR 285
>09_04_0360 -
16944990-16945202,16945288-16945377,16945525-16945746,
16945854-16946081,16946163-16946372
Length = 320
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 114 KCVTWPRIYLAVLGGKTTPAAADVEKILSSVGI---EADAEKLKKVITELNGKDVEQLI 281
KC+ P +Y + L ++ +A +++++ + + D +K+K V GKD+E I
Sbjct: 239 KCIYNPSMYFSKLLHRSLQCSATNKRLVTRAILGSDDVDMDKIKSVFKSSYGKDLEDFI 297
>07_03_1321 - 25794146-25794904
Length = 252
Score = 28.3 bits (60), Expect = 8.0
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = -2
Query: 343 GXXFPASLTGN*RQAFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRIFSTSAAAGV 164
G FP+ +G+ A A+ ++S P ++ T L A A + + R +T+AAA
Sbjct: 138 GVLFPSG-SGSGSAAAPAFQAMMRASSSPATNTTTSLVLDALAML-AKSRAIATAAAAAA 195
Query: 163 VLPPSTAK*IRGHVTHFLS 107
PPS+ + G + L+
Sbjct: 196 AAPPSSGSDLYGGYGNMLA 214
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 263 LAVELRDYFLKLLSVSFDTDGAEDLLNVSGSWRGLATQHSQVNTR 129
L EL DY LK VS + G N++ WR + ++N R
Sbjct: 1035 LCEELLDYILKNHQVSQEPKGILHAFNIALCWRAASLLKHKINRR 1079
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,118,570
Number of Sequences: 37544
Number of extensions: 144371
Number of successful extensions: 456
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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