Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E18
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    26   6.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    26   6.2  

>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = +2

Query: 605 LYRRKKAKQSKEKDPEELTTMITN---ATIDMK---EEPVDEEEP 721
           L RRK+  + +EKDPE+    ++    ATI+ K   +E + E++P
Sbjct: 26  LERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYDETIIEDKP 70


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 632 SKEKDPEELTTMITNATIDMKEEPVDEEEPFGGDFADNDP 751
           S E D ++ T     A +   EEP + E     D AD+DP
Sbjct: 44  SNETDNDDATENAVPAEVQAPEEPKEPETVDNIDPADDDP 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,785
Number of Sequences: 5004
Number of extensions: 53908
Number of successful extensions: 118
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)