Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E18
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45...    29   4.9  
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53...    28   8.6  
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    28   8.6  

>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
            459924-460183,461834-461918,462587-462919,463053-463137,
            463289-463374,463455-463556,463656-463795,464332-464658,
            464778-465389,465502-465586,465587-465682,465762-466115,
            466212-466322,466426-466509,467086-467164,467742-467899,
            468034-468150,468240-468398,468475-468557,469098-469200,
            470784-471080
          Length = 1899

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 139  DWQLTCRVCLETGDMVSIFDWDENNEQL 222
            DWQ        +GDM SI  WD + EQL
Sbjct: 927  DWQQQSGYLYASGDMSSILVWDLDKEQL 954


>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
            538601-538860,539950-540073,540978-541310,541447-541531,
            541683-541768,541843-541941,542041-542180,542717-543043,
            543163-543774,543887-543971,543972-544067,544147-544500,
            544536-544559,544597-544707,544811-544894,545468-545546,
            546122-546279,546412-546528,546622-546780,546857-546939,
            547525-547627,549184-549495
          Length = 1925

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 139  DWQLTCRVCLETGDMVSIFDWDENNEQLS 225
            DWQ        +GDM SI  WD + EQ++
Sbjct: 940  DWQQQSGYLYASGDMSSILVWDLDKEQVN 968


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 115 IYVLFSKMDWQLTCRVCLETGDMVSIFDW 201
           I VL S  D  + C +  E GD++++ DW
Sbjct: 661 IAVLASMHDTSIMCNLAQEYGDVINLHDW 689


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,576,902
Number of Sequences: 37544
Number of extensions: 301297
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)