Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E16
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 66 6e-12
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 31 0.16
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 30 0.37
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 29 0.86
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 28 1.5
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 27 2.6
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.5
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 27 4.6
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 4.6
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.1
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |... 26 8.1
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 66.1 bits (154), Expect = 6e-12
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Frame = +2
Query: 149 IQVIVWDCLNNYEFENAIFLAERLYAEVGSEEAAFLLGTCYYRSGRINEAHHLLQNKTLA 328
++ ++W C++N ++N+IF +ERL+A S E+ +LL ++ + N + LL
Sbjct: 5 LKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLDRVISH 64
Query: 329 LPQARFLLAKCSADLKSYK---DAEIALGSNL--------DIIASEFGEQAPYALRLLAK 475
+P +L A+ S L YK A A SN D I+S A L +L
Sbjct: 65 VP-CTYLFARTSLILGRYKQGISAVEACRSNWRSIQPNINDSISSRGHPDASCMLDVLGT 123
Query: 476 VYISTGRRNEAAEAHRKALSLNPFMWKSFAQLCNMGEKVDPQQVFQI 616
+Y G +A + +A+S+NP+ + +F L +G +D VF I
Sbjct: 124 MYKKAGFLKKATDCFVEAVSINPYNFSAFQNLTAIGVPLDANNVFVI 170
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 31.5 bits (68), Expect = 0.16
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 17/215 (7%)
Frame = +2
Query: 185 EFENAIFLAERLYAEVGSEEAAFLLGTCYYRSGRINEAHHLLQN-KTLALPQARFLLAKC 361
EF+ +A EV E+ +LL Y+ A + LQN K+ R
Sbjct: 70 EFDLDPDMANEKLLEV-EEKNIYLLAKSYFDCKEFERAAYTLQNCKSSKSIFLRLYSKYL 128
Query: 362 SADLKSYKDAEIALGSNLDIIAS--EF-------------GEQAPYALRLLAKVYISTGR 496
+ + KS ++ E L +NL + ++ EF G + PY L L VY +
Sbjct: 129 AGEKKSEEENETLLNTNLTLSSTNREFYYISEVLESLHYQGNKDPYLLYLSGVVYRKRKQ 188
Query: 497 RNEAAEAHRKALSLNPFMWKSFAQLCNMGEKVDPQQVFQINNSEF-TFGVTTLVNLVSNS 673
++A + + + PF W ++ +L +D + S+ + + T + V S
Sbjct: 189 DSKAIDFLKSCVLKAPFFWSAWLEL---SLSIDSLETLTTVVSQLPSTHIMTKIFYVYAS 245
Query: 674 ENISFVNCNIHNNSSMNTNVTPNNVATRTPMAMST 778
+ VN + + + + PN+ +T A+ T
Sbjct: 246 HELHQVNSSAYEKLAEAEIIFPNSRYLKTQRALLT 280
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 30.3 bits (65), Expect = 0.37
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 533 SLNPFMWKSFAQLCNMGEKVDPQQVFQINNSEFTFGVTTLVNLVSNSENISFVNCN 700
SL+P +++ L N V+ FGV +++L+ N NIS N N
Sbjct: 806 SLDPNLYEGLVFLKNYDGDVENDMALNFTVVHEEFGVRNVIDLIPNGSNISVTNEN 861
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 659 LVSNSENISFVNCNIHNNSSMNTNVTPNNVATRTPMAMSTSITPETQAPMKR--MHSVXS 832
L +NS S + + S MNTN T N TP + IT +T ++ H +
Sbjct: 357 LRANSMKASLPDISNTGISGMNTNTTYNTNINNTPQTAISGITQDTSPSIRTNCHHCLDD 416
Query: 833 GM 838
GM
Sbjct: 417 GM 418
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1328
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 638 GVTTLVNLVSNSENISFVNCNIHNNSSMNTNVTPNNVATRTPMAMSTSITPETQAP 805
G+ V++V N N FV N + TNV+ NNV+ T + T T +P
Sbjct: 1189 GMQVEVSMVLNVTNPQFV-VNTRAGKNRKTNVSANNVSQGTDSRLVTKPTSTFPSP 1243
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.5 bits (58), Expect = 2.6
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +2
Query: 101 IWKVFIYSKKMIVQEPIQVIVWDCL 175
+W++ +Y+KK +V+ + V V C+
Sbjct: 726 VWRIRVYAKKHVVKHGVSVCVSHCI 750
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 350 LAKCSADLKSYKDAEIALGSNLDI 421
LA+CS LK KD + + GSN+ +
Sbjct: 17 LAQCSPILKDTKDTKFSTGSNISL 40
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 229 FRIQSFCQKYSVFEFIIVEAIPNDNLDRFLHNHLFTVNKYFPD 101
FRI C ++F F +V I N + N L+ + YF D
Sbjct: 357 FRIMVLCGVVTIFSFSLVALIFCSNTNNNSTNKLWKIRWYFLD 399
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/66 (19%), Positives = 31/66 (46%)
Frame = -2
Query: 552 HINGLRDSAFRWASAASFLLPVLMYTLARSRKAYGACSPNSEAIISRLEPSAISASL*DF 373
++ + + ++AS+ SF+ P+ + K P I ++ +PS + +L F
Sbjct: 177 YLRKINSNVNKYASSQSFIPPLEEPSFTVKEKCPSGHPPWPAGICTKCQPSTVMLNLQPF 236
Query: 372 KSAEHL 355
+ +H+
Sbjct: 237 RVIDHI 242
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 796 CLRSYTCRHSHGCTCGNII 740
C YTCRH H C +++
Sbjct: 156 CHEWYTCRHCHNDACDHVL 174
>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 267 VIIGQGELMKHIIYFKIKPLHYHKQGFY*PNVQLT*NPTKMQKLHWAPTL 416
V++ QG ++K F+ L Y Q PN P K++K HW P L
Sbjct: 19 VLLSQGNVLKKTALFQ---LPYPLQKPVAPNGM---RPAKLRKDHWVPLL 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,650,784
Number of Sequences: 5004
Number of extensions: 77945
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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