Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E14
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    31   0.24 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.74 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.9  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 165 RNMVATTFLLFIEDYSRKSLGYNFVCLYSHLWIXNSN 55
           +N+V+  FL  +  Y+R++ GY+F  ++S +W  N +
Sbjct: 430 QNLVSRVFLEQVMIYTRQNAGYDFWQVHSTIWANNGD 466


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 670 PPPXXXPXXXXXPPPPPXGXKKK 738
           PPP   P     PPPPP   KK+
Sbjct: 14  PPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 670 PPPXXXPXXXXXPPPPPXGXKKK 738
           PPP         PPPPP G  KK
Sbjct: 13  PPPPGFEPPSQPPPPPPPGYVKK 35


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 658 GGXXPPPXXXPXXXXXPPPPP 720
           GG  PPP         PPPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,692,321
Number of Sequences: 5004
Number of extensions: 20983
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)