Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E14
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   7.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   7.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 234 PPXXXQXEXPGGRXGXXRXQNHRRNMVA 151
           PP   Q   PGG  G    QN  + M++
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMIS 66


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 80  EYKHTKLYPSD 112
           EY HTK YP D
Sbjct: 62  EYDHTKNYPFD 72


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 80  EYKHTKLYPSD 112
           EY HTK YP D
Sbjct: 59  EYDHTKNYPFD 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,460
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)