Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E13
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 35 0.013
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 34 0.031
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 33 0.071
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 31 0.17
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 31 0.17
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 31 0.22
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 30 0.38
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 29 0.67
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.88
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.5
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 3.6
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 3.6
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 27 3.6
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 4.7
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 4.7
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 26 6.2
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 8.2
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 8.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 8.2
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 26 8.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 26 8.2
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 26 8.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 8.2
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 26 8.2
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 62 NMAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLN 193
N+ F DGK+ +T ++DG +K+WD +++ Y S +N
Sbjct: 85 NVTAIAFHCDGKWLATSSEDGTVKVWDMRAPSVQRNYDHKSPVN 128
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.9 bits (74), Expect = 0.031
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT 175
FS DGKY T T+D ++K+WD T ++ ++
Sbjct: 368 FSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFS 399
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 32.7 bits (71), Expect = 0.071
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 303 IVLGTTNGKLLIYSISQAKIINVWVPAKHFS-AKVTALDWSRKYGLYSCTKDSRVYEWNI 479
++ G NG +++YS + V KH + AL S K L S + D VY W++
Sbjct: 203 VLSGVNNGDIILYSTRHQEGYPVTSLKKHTAPVSCLALHGSEKKVL-SGSWDKMVYYWDL 261
Query: 480 EDGSVKQTYN 509
G TYN
Sbjct: 262 NTGDAISTYN 271
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 31.5 bits (68), Expect = 0.17
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSYVPTVD 220
FS+ G++ T + DG ++ WD T L + S ++ PT D
Sbjct: 580 FSDTGRWLVTASLDGTIRTWDLPTGHLIDSISTPSVCTSLTFAPTGD 626
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 83 SEDGKYYSTITKDGRLKIWDTET-NVLKQEYTPXSSLNIT 199
+ DG+Y T D LK+WD T L YTP + +T
Sbjct: 274 NRDGRYMVTAGADSLLKVWDLRTYKELHSYYTPTPAQRLT 313
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 312 GTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIEDGS 491
G+ +G + ++ S+ W H V L +S + + SC D VY N +DG
Sbjct: 83 GSGDGAVKLWDASER--CERWTSKAH-EGIVRGLVFSNQGDVLSCASDRYVYMLNKQDGK 139
Query: 492 VKQTY 506
VK++Y
Sbjct: 140 VKRSY 144
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 30.3 bits (65), Expect = 0.38
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWD 142
FS DGKY +T +D +++IWD
Sbjct: 342 FSPDGKYLATGVEDQQIRIWD 362
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 77 MFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSYVPTVDNRQSISFKLKRE 256
MFS DG++ + + D ++IW + +++Q + S+ ++ P D + +S L
Sbjct: 424 MFSPDGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSP--DGKYLVSGSLDNT 481
Query: 257 PKQFKCE 277
K ++ +
Sbjct: 482 IKLWELQ 488
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 29.5 bits (63), Expect = 0.67
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWDTETN 154
FS DG+Y ++++D L++W E++
Sbjct: 202 FSSDGRYLCSVSEDRTLRLWSIESS 226
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 306 VLGTTNGKLLIYSISQAKIINVWVPAKHFSA 398
++G+ G L +Y+I ++ ++VW F A
Sbjct: 481 LIGSRTGSLALYNIGESNYLSVWRRIHEFDA 511
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 0.88
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWDTE 148
FS+DG+ + + + D +K+WDTE
Sbjct: 318 FSQDGRSFLSTSFDKTIKLWDTE 340
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 65 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSS 187
++ +S DG+ T DG++K+WD + +T +S
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDMNSGFCIVTFTQHTS 382
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 74 AMFSEDGKYYSTITKDGRLKIWDTET 151
A FS DG+ +T + D +++WD +T
Sbjct: 395 ASFSPDGRCIATASFDSSVRLWDGKT 420
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 393 SAKVTALDWSRKYGLYSCTKDSRVYEWNIEDG 488
+A +T + W + +YS + D + W+ +DG
Sbjct: 269 TAPITCVRWGGQNWIYSSSYDKTIRIWDAKDG 300
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 402 VTALDWSRKYGLYSCTKDSRVYEWN 476
VTA+DWS + L S + D V WN
Sbjct: 440 VTAVDWSSEGQLASISDDGSVRVWN 464
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 693 ILSLVSFNDAYYIVEGSENERLLSFWDVTVTDESTXNNNDEPTPNKRHK 839
+ SL+SF Y IVE + R L FW + D S +P+ ++ K
Sbjct: 358 LASLLSF-PGYAIVEEKVSWRTLEFWTTLIEDFSMSKAATDPSKDEIFK 405
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWD 142
FS+DG Y + +D L++WD
Sbjct: 306 FSQDGNYLLSRGEDNALRVWD 326
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 65 MAEAMFSEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSYVP 211
+ + +S +G Y + K G + IWDT+++ + E P S++ ++ P
Sbjct: 233 VTDISWSSNGMYIAASFKKGGILIWDTQSHEVVVE-LPYSTVVALAWQP 280
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 6.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +2
Query: 83 SEDGKYYSTITKDGRLKIWDTET 151
S+DG+ ++ ++D +K+WD+ T
Sbjct: 474 SKDGRIIASASQDKTIKLWDSST 496
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 669 GYSTSQTAILSLVSFNDAYYIVEGSENERLLSFWDVTVTDESTXNNNDE 815
G S+ + S VS + + IVEG EN+ LS VT+ + S ++N E
Sbjct: 245 GSSSPPRSEESFVSMDSSSSIVEGFEND--LSPSQVTLNESSIISSNRE 291
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/52 (30%), Positives = 20/52 (38%)
Frame = +2
Query: 161 KQEYTPXSSLNITSYVPTVDNRQSISFKLKREPKQFKCEYKRK*VPMHSIRH 316
+ Y P S N + Y +R S R P EY + P HS RH
Sbjct: 190 ENSYRPSRSQNNSHYNDKSFHRSRYSRARSRSPGSNISEYSDQSPPYHSYRH 241
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +2
Query: 89 DGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITS 202
DG Y++T + D +K+W +++ ++ P ++ +T+
Sbjct: 488 DGTYFATASADHTVKLWSLKSSF---DFVPGTTRKVTT 522
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/60 (18%), Positives = 31/60 (51%)
Frame = +3
Query: 306 VLGTTNGKLLIYSISQAKIINVWVPAKHFSAKVTALDWSRKYGLYSCTKDSRVYEWNIED 485
++ + N + + KI+ ++ K+ +V + + ++S ++D +VY W++E+
Sbjct: 196 LISSLNSSIHLLDQETGKILKSYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLEN 255
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 62 NMAEAMFSEDGKYYSTITKDGRLKIW 139
N+ + + S+DG+ T + D +K+W
Sbjct: 218 NVRDILISDDGRTILTASSDATIKLW 243
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = +3
Query: 159 SNRNTHLXLHLTSPPTCLQWTTVSQSVSNLKG 254
+N + L + +PP+C ++ Q+++ LKG
Sbjct: 753 NNESKLFALKIETPPSCFEFYLTRQAMTRLKG 784
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 80 FSEDGKYYSTITKDGRLKIWDTETNVLKQEYT-PXSSLNITSY 205
F GKY++T + D +K+W +++ T P ++ +++Y
Sbjct: 184 FDPAGKYFATESDDRTIKVWRVSDFSIEKTITGPFNNSPLSTY 226
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 83 SEDGKYYSTITKDGRLKIWDTETNVLKQEYTPXSSLNITSY 205
+E G + ++ DG LKI DT T + ++ + I+ Y
Sbjct: 68 NESGTEFISVGSDGVLKIADTSTGRVSSKWIVDKNKEISPY 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,564,021
Number of Sequences: 5004
Number of extensions: 74023
Number of successful extensions: 336
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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