Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E12
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical ...    33   0.35 
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    29   4.3  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    29   4.3  

>AL132876-3|CAD21657.2|  746|Caenorhabditis elegans Hypothetical
           protein Y105E8A.3 protein.
          Length = 746

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 675 LTK**RCADLYSYSVLQKISHINNAIWVCTV 767
           LTK  RC  ++   +L K SHI N +W+C +
Sbjct: 31  LTKILRCIGVFFVDILAKSSHIVNLLWLCKI 61


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 352 CHNRADHYRLQNVMYRMTNVIYFFFGHWYTYIYD 251
           C +  D Y+L  +   +  V+Y F G W  Y+++
Sbjct: 133 CKHYYDKYKLDRISASVLLVLYSFLGAWVFYLFE 166


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 352 CHNRADHYRLQNVMYRMTNVIYFFFGHWYTYIYD 251
           C +  D Y+L  +   +  V+Y F G W  Y+++
Sbjct: 133 CKHYYDKYKLDRISASVLLVLYSFLGAWVFYLFE 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,069
Number of Sequences: 27780
Number of extensions: 318141
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)