Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E12
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   3.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   3.7  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      22   6.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   8.5  

>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 441 LAFDFAKEFLLLHSKCTAITTESSAL 518
           L F F    L++ SKC A++ +  +L
Sbjct: 15  LLFSFVVILLIIPSKCEAVSNDRQSL 40


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/37 (24%), Positives = 19/37 (51%)
 Frame = +1

Query: 655 ANFNYFS*LNSDVALTYIHILYSKKYLI*IMQYGYVL 765
           AN N           TY+H+LY   +++  + +G+++
Sbjct: 34  ANVNLLKNRTGRYMFTYLHLLYQDVHVMIWIGFGFLM 70


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 441 LAFDFAKEFLLLHSKCTAITTESSAL 518
           L F F    L++ SKC A++ +   L
Sbjct: 15  LLFSFVVILLIIPSKCEAVSNDMQPL 40


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 634 IPNIKEAANFNYFS*LNSDVALTYIHILYSKKYLI*IMQ 750
           + N  + +N+N ++  N++    Y   LY K Y+I I Q
Sbjct: 318 LSNNYKYSNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQ 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,040
Number of Sequences: 438
Number of extensions: 4409
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)