Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E09
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 29 1.2
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom... 29 1.2
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 28 2.0
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.7
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 3.5
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c... 26 6.2
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 8.2
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|... 26 8.2
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 28.7 bits (61), Expect = 1.2
Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 4/162 (2%)
Frame = +2
Query: 302 KGFRVKHRQWKSKVDVKRYSFSKMNITQVTAKFT--DGDSTCNELKRISSLAEVKGTNPG 475
KG R KH + + K + + K I V ++ T + DS + E+ N
Sbjct: 30 KGIRQKHSKKEGKDETLKRDVEKF-IQNVNSEDTPSEDDSMSMDAFLEGGFEELDSANSN 88
Query: 476 DDKVRAFFERLLQSVPPPPVEDLLSTTTNANITSICEAPKRNNDFEDIDLPDYEHFVKNK 655
D A R +++P +D S ++ + K+ ++ D P++ F++
Sbjct: 89 D----AGSSRKRKNLPNENTQDSTSESSEEEEDGLESYQKQLEGLKEKD-PEFYKFLEQN 143
Query: 656 MQDLESSNYIPTTSTLKRSNRNVXFNLGNSKCPL--DCNESW 775
QDL N T + K + N + K L D + W
Sbjct: 144 DQDLLEFNAAETDAMAKEIDENERLKSSSGKIVLTSDTIQQW 185
>SPCC1442.17c ||SPCC285.02c|DUF292 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 271
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 665 LESSNYIPTTSTLKRSNRNVXF 730
L+SSNY+PT TL SN+ F
Sbjct: 237 LQSSNYLPTNPTLTHSNKAPSF 258
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 289 VLIFGFASGYIRKFSVVNVSRPRLDENVIRFHIFEWF 179
VLI GF ++ + NVS P LD+ +R ++ W+
Sbjct: 171 VLIRGFLLPHLASLTTKNVSEPELDK--LRHSLYNWW 205
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 527 PPVEDLLSTTTNANITSICEAPKRNNDFEDIDLPDYEHF-VKNKMQDLESSNYIPTTSTL 703
PP E++ S ++ ++++ +PK + E + L ++ F + +++ +L + + +
Sbjct: 897 PPSENVASYADDSLVSNLTMSPKLRDSMEQVPLENHREFEISDRVSELSFDSSTGSVLEI 956
Query: 704 KRSNRN 721
+ RN
Sbjct: 957 ADTRRN 962
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 510 NKRSKKALTLSSPGLVPLTSANEEILFNSLHVES-PSVN 397
N+R+ A L P + PL + E L NS VES PS N
Sbjct: 1392 NQRATAAELLMDPWVYPLRAGTEFDLMNSSVVESAPSTN 1430
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = -3
Query: 179 PFPP*PRLCPTDT----KNPFLRSTSSVVKSTRETXC*NPLSLA 60
P+P P+ PT T +N LRST++V+ +TR++ +P A
Sbjct: 225 PYPK-PQSVPTTTSPNNENNALRSTANVINNTRQSTATSPSMFA 267
>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 6.2
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 LQSVPPPPVEDLLSTTTNANITSICEAPKRNNDF-EDIDLPDYEHFVKNKMQDLESSNYI 685
+Q + VE+ N I+ I ++ F ED+ E+ + K E
Sbjct: 70 IQDIHVDYVEETKEKKFNVGISVIVRVTLKDGSFHEDVGYGSIEN-CRVKALAYEKCKKE 128
Query: 686 PTTSTLKRSNRNVXFNLGN 742
TT LKR+ RN ++GN
Sbjct: 129 GTTDALKRALRNFGSSMGN 147
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 512 QSVPPPPVEDLLSTTTNANITSICEAPKRN--NDFEDIDLPDYEHFVKNKMQDLESSNYI 685
Q+ P + D +T N T AP + N F + LP+ K+++ + ESSN
Sbjct: 167 QTADSPIIND--HSTANVTSTGQEHAPDSSSTNSFGGLLLPNQNSPKKSELGETESSNTT 224
Query: 686 PTTS 697
P S
Sbjct: 225 PANS 228
>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 587 APKRNNDFEDIDLPDYEHFVKNKMQDLESSNYI 685
+P+R FE + P+ E V +DL S YI
Sbjct: 33 SPRRKQLFEQMGFPNVETCVSGFPEDLNKSMYI 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,488,951
Number of Sequences: 5004
Number of extensions: 74367
Number of successful extensions: 231
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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