Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E09
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 34 0.13
12_02_1065 - 25777899-25778412,25778805-25778893 32 0.53
12_02_0580 + 20776820-20777247,20777341-20778109,20779280-207794... 32 0.70
04_01_0263 - 3532481-3532656,3532710-3532719,3532754-3532785,353... 31 1.2
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359... 30 2.1
04_04_0889 - 29105506-29106502,29106909-29107069,29107259-291073... 29 4.9
05_06_0267 - 26784861-26784896,26785324-26785404,26785530-267857... 29 6.5
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 34.3 bits (75), Expect = 0.13
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +2
Query: 284 ENSLSLKG-FRVKHRQWKSK--VDVKRYSFSKMNITQVTAKFTDGDSTCNELKRISSLAE 454
E SL KG + +K + K K +D+ +SF ++ +V +FTD ++ KR
Sbjct: 741 ELSLKFKGEWLIKEEKMKVKGHLDIPEFSFGELEDLEVEVRFTDDKGLASDDKRQICKDL 800
Query: 455 VKGTNPGDDKVRAFFERL 508
+P +K+RAF E L
Sbjct: 801 KSFLSPIREKLRAFEEEL 818
>12_02_1065 - 25777899-25778412,25778805-25778893
Length = 200
Score = 32.3 bits (70), Expect = 0.53
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 549 DSKSSTGGGGTLCNKRSKKALTLSSPGLVPLTSANEEILFNSL 421
D K GGGG + +RS A T +S P+ E +LF+ L
Sbjct: 126 DGKEGGGGGGVVERRRSTSAATTTSSSTKPIAVNCEVVLFDHL 168
>12_02_0580 +
20776820-20777247,20777341-20778109,20779280-20779447,
20779877-20780236
Length = 574
Score = 31.9 bits (69), Expect = 0.70
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +2
Query: 452 EVKGTNPGDDKVRAFFERLLQSVPPPPVEDLLSTTTNANITSICEAPKRNNDFEDIDLPD 631
E KG P DD+ R LL++VP L T + + I E PK D D D+PD
Sbjct: 486 EFKGFIPFDDRKR-LLRLLLENVPA-----LEKITMEFDPSYIFENPKEVRDKIDFDMPD 539
Query: 632 YE 637
Y+
Sbjct: 540 YQ 541
>04_01_0263 -
3532481-3532656,3532710-3532719,3532754-3532785,
3533237-3533348,3533586-3533649,3533778-3533843,
3533946-3534073,3534205-3534342,3534427-3534539,
3534611-3534776,3535045-3535107,3535197-3535304,
3535408-3535524,3535620-3535785,3535942-3536039,
3536136-3536233,3536378-3536514,3536654-3536878,
3536971-3537176,3537286-3537525
Length = 820
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 560 NANITSICEAPKRNNDFEDIDLPDYEHFVKNKMQDLESSNYIP 688
N + S+ + N D +++++ Y++FVKNK +L S +P
Sbjct: 332 NEQMFSLRQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLP 374
>09_04_0739 -
19833462-19834456,19835272-19835333,19835846-19835937,
19836271-19836540,19836795-19836913,19836947-19837778
Length = 789
Score = 30.3 bits (65), Expect = 2.1
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Frame = +2
Query: 296 SLKGFRVKHRQWKSKVDVKRYSFSKMNITQVTAKFTDGDSTCNELKRISSLAEVKGTNPG 475
S G + R W+ KVD K + S +T++ K + T + R + K +
Sbjct: 275 SSAGPKALRRSWEGKVDTKGKTNSDSKMTKLEKK-PENRGTMATIPRRKPPVDEKVQHKD 333
Query: 476 DDKVRAFFERLLQSVPP----------PPVEDLLSTTTNANITSICEAPKRNNDFED 616
D K++ ++ + P PP S +N N+T++ E P + D
Sbjct: 334 DSKLQNPAKKTTANAPSDDADKAMKKHPPTVKRTSGISNPNVTNLVEVPPNSKKLTD 390
>04_04_0889 -
29105506-29106502,29106909-29107069,29107259-29107390,
29107484-29107645
Length = 483
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -3
Query: 536 QRVEVERFATNVQRRLSLCHH 474
+RV+ ER+A N Q RLSL HH
Sbjct: 437 RRVKAERWAANRQLRLSLPHH 457
>05_06_0267 -
26784861-26784896,26785324-26785404,26785530-26785702,
26785780-26785938,26786199-26786328,26786447-26786609,
26787027-26787109,26787605-26787664,26787819-26787940,
26789126-26789275,26789354-26789546,26790156-26790393,
26791240-26791320,26791403-26791647
Length = 637
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +2
Query: 512 QSVPPPPVEDLLSTTTNANITSICEAPKRNNDFEDIDLPDYEHFVKNKMQD 664
+SVPPPP ED+ + ++ + + + + D D E V + D
Sbjct: 82 RSVPPPPTEDIPAVPGSSGVLPLSNLQRHSEKLSDTHGSDKEDEVVDSSDD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,328
Number of Sequences: 37544
Number of extensions: 467668
Number of successful extensions: 1380
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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