Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E09
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.70 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   2.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   8.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 158 TWVTEEMEPFEDVKPDHVFVKPW 226
           T   EE  P  D  P H ++ PW
Sbjct: 524 TLEVEEWNPLTDTVPIHTWIHPW 546


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/14 (71%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
 Frame = -1

Query: 178 HFLRDPGCV-QPIP 140
           HFL+ PGCV +PIP
Sbjct: 36  HFLQYPGCVPKPIP 49


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +2

Query: 176 MEPFEDVKPDHVFVKPWSRDIYYAKFPDIPRSESEDENSLSLKGFRVK 319
           + PF+D     +    W R IY  +    P  +  D   L L    VK
Sbjct: 620 VSPFDDSNVVQIDSPVWGRHIYDGRAMGFPLDKPVDPLLLVLSNIHVK 667


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = +2

Query: 176 MEPFEDVKPDHVFVKPWSRDIYYAKFPDIPRSESEDENSLSLKGFRVK 319
           + PF+D     +    W R IY  +    P  +  D   L L    VK
Sbjct: 620 VSPFDDSNVVQIDSPVWGRHIYDGRAMGFPLDKPVDPLLLVLSNIHVK 667


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 522  HLHPLKTCYPPPQMQT*PQSVKHRNV 599
            H  P + C PPP+M +  + + HR +
Sbjct: 1694 HCAPNRRCPPPPRMGS-AEGLSHRGM 1718


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = +2

Query: 359 SFSKMNITQVTAKFTDGDSTCNELKRISSLAEVKGTNPGDDKVRAFFERLLQSVPPPPVE 538
           SF      +V+   T G    N    ++S++  + T          ++ L  S+PPPP  
Sbjct: 711 SFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVIQTGANVNLWQPLSVSIPPPPSA 770

Query: 539 DLLSTTTNA 565
             +   TN+
Sbjct: 771 QNVPQNTNS 779


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/62 (19%), Positives = 25/62 (40%)
 Frame = +2

Query: 611 EDIDLPDYEHFVKNKMQDLESSNYIPTTSTLKRSNRNVXFNLGNSKCPLDCNESWYESIT 790
           ED++  +Y  F +++      +  +   + + + N  + +NL     P    E   E I 
Sbjct: 52  EDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNLLKKVIPEAFKEIGVEMID 111

Query: 791 VC 796
            C
Sbjct: 112 SC 113


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 161 RLCPTDTKNPFLRSTSSVVKSTRET 87
           + CP  TKNP   +T +  K  R +
Sbjct: 89  KYCPKGTKNPGTLATVNAFKLLRNS 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,526
Number of Sequences: 438
Number of extensions: 5179
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)