Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E08
         (884 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    25   2.3  
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    25   3.1  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -2

Query: 736 DDXFGIELLPSFNDIGLW--MRKRSKNSKPRSASEILQAVSTRSVRWNVLHNLPIMKSSS 563
           D   G+EL P    IG    +   +  + P +A+ + +   +   RW   H+L +  + +
Sbjct: 656 DGVLGVELPPGAELIGYADDLVLLAPGTTPAAAAVVAEEAVSAVDRWLREHHLELAHAKT 715

Query: 562 RLTVPSSI 539
            +TV SS+
Sbjct: 716 EMTVISSL 723


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 626 GLQDFTGRPGLGVFRPLPHPQSDV 697
           GL D  G+      RPL +PQ+DV
Sbjct: 57  GLWDTAGQEDYDRLRPLSYPQTDV 80


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 821,145
Number of Sequences: 2352
Number of extensions: 16844
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 95093730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)