Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E06
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    27   0.17 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.53 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.70 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.70 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -1

Query: 724 RKRHASRREKGGQVSGKRQGRNRRAQRGSFQGETPGIFIVLSGFATSDLSVDFCDARQGG 545
           ++ H S   KG  +    Q   R  ++    G TP  F + +    +   +D   +R+G 
Sbjct: 597 KREHRSSSTKGITIQEPPQWHTRSTEKRVSAG-TPAAFNISTTIYENQNCLDASSSRRGS 655

Query: 544 GAYGKTPANAAFL 506
                TPA + F+
Sbjct: 656 KIGSPTPAESTFI 668


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 476 SHVLSCVIPLILWITVLPPLSELIPLAA 393
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 613 RYQAFPPGSSLVALSCSDPAAYRIPVRL 696
           +YQ  P    + + S  DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 613 RYQAFPPGSSLVALSCSDPAAYRIPVRL 696
           +YQ  P    + + S  DPA YRI  R+
Sbjct: 398 KYQIVPSALEIFSTSMKDPAFYRIYKRI 425


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 497 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 399
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 293 EKTSHTSTLNLKHKMNAIVVV 231
           E    T TLNLKH   A++V+
Sbjct: 56  EDAEDTQTLNLKHLRAAVLVL 76


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 550 GGGAYGKTPANAAFLRFLAF 491
           G   YG  P N AF RF  +
Sbjct: 68  GASGYGFVPPNQAFYRFFYY 87


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 638 APSLRSPVPTLPLTG 682
           AP    P+P+LPL G
Sbjct: 468 APCFEEPLPSLPLPG 482


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 476 SHVLSCVIPLILWITVLPPLSELIPL 399
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 293 EKTSHTSTLNLKHKM 249
           ++  H+STL++ HKM
Sbjct: 238 DENRHSSTLDIDHKM 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,637
Number of Sequences: 438
Number of extensions: 6072
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)