Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E05
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.90 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 20/58 (34%), Positives = 20/58 (34%)
 Frame = -1

Query: 781 GGGXXFFLGGGXXXXPPPPXXXGGXKXXPGWXFFXXXKXXLGGGXXFFXFXGGGXNLG 608
           GGG   F GGG    PP P   GG     G           GGG   F    GG   G
Sbjct: 187 GGGFGGF-GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/87 (21%), Positives = 23/87 (26%)
 Frame = +3

Query: 609 PKXXPPPXKXKKXFPPPXFXFXXKKKXHPGXXXXPPXXXGGGGXSXXPPPKKKXXPPPXX 788
           P   PPP +  +  PP            P     PP      G    PP  +   PPP  
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPP----PPPPRSNAAGSIPLPPQGRSAPPPPPP 366

Query: 789 KXXXXXXXXXXXXXXXXXXXLXPPPPP 869
           +                     P PPP
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPP 393


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,650
Number of Sequences: 5004
Number of extensions: 12505
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)