Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E03
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 200 2e-52
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 200 2e-52
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 1.2
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 1.2
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 29 1.2
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 2.0
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 2.0
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 27 3.6
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 4.7
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 8.2
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 200 bits (488), Expect = 2e-52
Identities = 95/182 (52%), Positives = 133/182 (73%)
Frame = +2
Query: 239 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 418
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 419 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 598
+V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 599 TRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKXPRFEISKLMELH 778
++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 173 QNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
Query: 779 GE 784
GE
Sbjct: 233 GE 234
Score = 62.9 bits (146), Expect = 6e-11
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +1
Query: 133 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 267
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G +N ++G+
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 200 bits (488), Expect = 2e-52
Identities = 94/182 (51%), Positives = 136/182 (74%)
Frame = +2
Query: 239 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 418
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 419 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 598
+V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 599 TRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKXPRFEISKLMELH 778
++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 173 QNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
Query: 779 GE 784
GE
Sbjct: 233 GE 234
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 133 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 267
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G +N ++G+
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +2
Query: 236 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 415
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 416 WMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 538
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 269 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 442
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 443 IEANIDVKTT 472
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -2
Query: 330 LRKDLSASVSACRSARETSKTLPFNPSEAIFVXLGTVDKRGADLPLAEHRRSLDIVP-IF 154
+ KD S + +A SA E +P +FV GTV +DLP+ R L ++ F
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPILLPRMVLRVLKGKF 390
Query: 153 ASEWVDNLLLNT 118
++ + L +NT
Sbjct: 391 EADPYEALRINT 402
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 770 PSTSRSRNGASSTLSPFGCKHRAE 699
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 590 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 721
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 154 KDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSFR 276
++WY ++S + +L+ R +G N GRI G +FR
Sbjct: 290 QEWYSFFPRYVYSTNCMNDSLLTRLEGIGNAIGRI-GNAFR 329
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 436 LPFFNHPPELIGCEVHAVEVAEHITS 359
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 496 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 588
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,408
Number of Sequences: 5004
Number of extensions: 69789
Number of successful extensions: 203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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