Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_E03
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        30   0.032
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        30   0.032
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        30   0.032
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   6.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.6  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 153 ASEWVDNLLLNTFFTALRQAFIFPDRHVQNNKT*DEILRNS 31
           A  W D +LLN    A+    + P+ H++N K  D I RNS
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNS 379


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 153 ASEWVDNLLLNTFFTALRQAFIFPDRHVQNNKT*DEILRNS 31
           A  W D +LLN    A+    + P+ H++N K  D I RNS
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNS 379


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 29.9 bits (64), Expect = 0.032
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -2

Query: 153 ASEWVDNLLLNTFFTALRQAFIFPDRHVQNNKT*DEILRNS 31
           A  W D +LLN    A+    + P+ H++N K  D I RNS
Sbjct: 339 ADWWKDIMLLNEKTLAVPAPPVLPENHLKNAKYLDVIERNS 379


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 144 WVDNLLLNTFFTALRQAFIF 85
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 144 WVDNLLLNTFFTALRQAFIF 85
           +++++ LNT++  LRQAF F
Sbjct: 223 FIEDIGLNTYYFFLRQAFPF 242


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 336 LNLRKDLSASVSACRSARE 280
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 767 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 675
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 767 STSRSRNGASSTLSPFGCKHRAEGRCHGRPS 675
           S S+S+  + S++S    +  + G C  RPS
Sbjct: 22  SNSQSQRSSGSSISRNSNRSESSGYCGRRPS 52


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 171 QGSVYVQQEASRHH 212
           Q S+Y+QQ+  +HH
Sbjct: 94  QHSLYLQQQQQQHH 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,829
Number of Sequences: 438
Number of extensions: 4753
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)