Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_E01
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 38 0.001
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.28
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 1.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 28 1.5
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 3.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 3.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 3.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 3.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 3.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 3.5
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 3.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 3.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 3.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 3.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 3.5
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 8.0
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 38.3 bits (85), Expect = 0.001
Identities = 36/162 (22%), Positives = 62/162 (38%)
Frame = +2
Query: 278 TASLMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGF 457
T + S S L+T T + + ++ S T P ++ + +T+
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588
Query: 458 VLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTL 637
C + + ++S SW T P TS S+V S +++ T
Sbjct: 589 TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTS 648
Query: 638 KTFTLSDSLYVKFSTLST*WVKYSSWTSFWTENFTYGSDVVS 763
TFT S S+ S+ +T ++S +S + N T S VS
Sbjct: 649 TTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVS 690
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.28
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -3
Query: 431 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 273
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 272 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 111
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 9 SXRXTIGNSL-RFCHSAPDTRT*RTSVLTTATDAPRARH 122
S R IG++ + HS P TR R SV TTAT R+++
Sbjct: 146 SPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKN 184
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = -2
Query: 780 GSISVKLTTSLP*VKFSVQKEVHEEYL-THYVDKVENFTYKESESVKVLSVQVRVEIVDK 604
GSI L S+ +F +K+V E+Y TH ++ N S++ + +++ E +
Sbjct: 443 GSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLNNRSISSDAELGMISRLKQEAGN- 501
Query: 603 *LFTTRLALVFND 565
+FT +L +FND
Sbjct: 502 -VFTQKLEGMFND 513
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.6
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -3
Query: 344 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 165
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 164 SSLR 153
+SLR
Sbjct: 200 ASLR 203
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -2
Query: 351 RDGESRVYPAVR-VHNGERDFINDAVN 274
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +1
Query: 550 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 663
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.1 bits (57), Expect = 3.5
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +1
Query: 559 CPIVEDECKSGRKKLLVDYFHTNLHTQ-NFYAFRFFICEVLNFINVVGQIFFMDFFLDGE 735
CP++ K G +++VDY N + + N Y + E L + G F L
Sbjct: 450 CPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLP--LIEQL-LAKIQGSTIFTKLDLKSA 506
Query: 736 FHLWQ*R-GQLHRNGARXTRG 795
+HL + R G H+ R RG
Sbjct: 507 YHLIRVRKGDEHKLAFRCPRG 527
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 8.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 698 VKYSSWTSFWTENFTY 745
+K+S+W W EN TY
Sbjct: 217 LKHSAWPVLWAENVTY 232
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,583,914
Number of Sequences: 5004
Number of extensions: 76818
Number of successful extensions: 259
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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