Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D23
         (1064 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...   120   3e-28
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...   117   2e-27
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    32   0.12 
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.21 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   5.9  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  120 bits (290), Expect = 3e-28
 Identities = 61/107 (57%), Positives = 79/107 (73%), Gaps = 2/107 (1%)
 Frame = +1

Query: 166 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 345
           MS  +E  V  AKLAEQAERY++M   MK+V  +  +LS EERNLLSVAYKN++GARR+S
Sbjct: 1   MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60

Query: 346 WRVISSIEQKXE--GSERKQQMAKEYRVKVEKXLXEICYDVXGLXDK 480
           WR+ISSIEQK E  G+ R+  + KEYR K+E  L +IC+DV  + +K
Sbjct: 61  WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEK 107


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score =  117 bits (282), Expect = 2e-27
 Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
 Frame = +1

Query: 169 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 348
           +  +E+ V  AKLAEQAERY+ M   MK V  T  EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3   TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62

Query: 349 RVISSIEQKXE--GSERKQQMAKEYRVKVEKXLXEICYDVXGLXDK 480
           R++SSIEQK E  G+  + ++ KEYR K+E+ L  IC D+  + +K
Sbjct: 63  RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEK 108


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 25/104 (24%), Positives = 43/104 (41%)
 Frame = +1

Query: 142  ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 321
            I S+  S  S   EEL+ R +     + Y+ MA  + E  E   ++ +    LLS  Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056

Query: 322  VVGARRSSWRVISSIEQKXEGSERKQQMAKEYRVKVEKXLXEIC 453
                    +R+ + +E+          +  EY   +E+ L + C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +1

Query: 169 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 339
           SV    + ++ K  ++ E + ++ + +K V+  ET  E+SN+E N LL + YK V     
Sbjct: 3   SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61

Query: 340 SSWRVIS 360
           S+W   S
Sbjct: 62  STWATFS 68


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 316 KNVVGARRSSWRVISSIEQKXEGSERKQQMAKEYRVKVE 432
           KN+     S+ R +SS + K   +E +  M  +Y  K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,812,699
Number of Sequences: 5004
Number of extensions: 41990
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)