Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_D19
(882 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 33 0.071
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 0.88
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 1.2
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 28 2.0
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.7
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 27 2.7
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 2.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 6.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 6.2
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 26 8.2
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 26 8.2
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 32.7 bits (71), Expect = 0.071
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 273 VLGDNETGKTTL-VAKLQGVEDPKKGSALEYAYIDVRDEYRDDHTRLSVWVLDGDPGHTN 449
++GD+ GKT+L V +QG D + L +++ R+ S+W L G N
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 450 LLKFALSE 473
+L ++
Sbjct: 75 MLPMVCND 82
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.1 bits (62), Expect = 0.88
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 240 NTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGS 350
N P NK +V+G +GK++L++ L G KGS
Sbjct: 635 NIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGS 671
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 249 LPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDV 377
L + V +LG N GK+TL+ L G P++G ++ + V
Sbjct: 716 LSLSSRVAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPNLRV 758
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +3
Query: 258 NKNVLVLGDNETGKTTLVAKL 320
N NVLVLG++ +GK+TLV L
Sbjct: 95 NFNVLVLGESGSGKSTLVNTL 115
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 213 ILEEVQ-NQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGS 350
IL+++Q N LPS ++V+G +GK++++ + G E KGS
Sbjct: 250 ILQDIQDNNSAVTLPS---IVVIGSQSSGKSSVLEAIVGHEFLPKGS 293
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/42 (23%), Positives = 23/42 (54%)
Frame = +3
Query: 246 KLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYI 371
+L +N ++G+ +G+TT + +QG P ++ Y ++
Sbjct: 26 ELARKQNWAIIGNTGSGRTTFLRCIQGSFTPSPSTSFSYPFL 67
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 237 GNTKLPSNKNVLVLGDNETGKTTLV 311
G+ K P + +++LGD GKT+L+
Sbjct: 6 GSKKKPIYRKIVILGDGAAGKTSLL 30
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 207 SAILEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQG 326
S L +++N N +P N+ LV+G +GK+TL L G
Sbjct: 591 STALFQLKNL-NFTIPRNQFTLVVGSTGSGKSTLAMALLG 629
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 240 NTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEY 362
N L V ++G N GKTTL+ + P GS + +
Sbjct: 614 NFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRH 654
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 162 KSKKKENGDGKDNLWSAILEEVQNQGNTKLPSNKN 266
K KKK+N D K NL S+ + + T+ +KN
Sbjct: 91 KKKKKDNDDFKQNLKSSSNKTEEKYSATQASKSKN 125
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 225 VQNQGNTKLPSNK-NVLVLGDNETGKTTLVAKLQGVEDP 338
V+ +GN+ N VL+LG ++GKTT++ +++ + P
Sbjct: 62 VRVKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRLLYSP 100
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +3
Query: 174 KENGDGKD--NLWSAILEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAK--LQGVEDPK 341
+E G G + ++W+AI N K+PSNK + LG + T VAK + + DP
Sbjct: 14 EETGKGLEVYSIWTAI-------SNGKMPSNKQLRGLGSSLTDGAKSVAKERQKKISDPA 66
Query: 342 K 344
+
Sbjct: 67 R 67
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,989,705
Number of Sequences: 5004
Number of extensions: 59357
Number of successful extensions: 212
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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