Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D16
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.16 
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    31   0.28 
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    27   2.6  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    27   3.5  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.5  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 31/148 (20%), Positives = 56/148 (37%)
 Frame = +3

Query: 276 TASLMKSRSPLWTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGF 455
           T +   S S L+T T   +    +    ++ S   T  P ++      +   +T+     
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 588

Query: 456 VLCYSFKQSCFMFPATCGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTL 635
             C +     +            ++S   SW  T P   TS S+V  S    +++   T 
Sbjct: 589 TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTS 648

Query: 636 KTFTLSDSLYVKFSTLST*WVKYSSWTS 719
            TFT S S+    S+ +T    ++S +S
Sbjct: 649 TTFTSSTSISTSSSSTATSSTSFASESS 676


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
 Frame = -2

Query: 429 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 271
           L ++CP      T GP PG T  +PT  ++        Y     S+++S I  +ST+ + 
Sbjct: 36  LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94

Query: 270 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 109
            S      V  S + +   T+       T  S  T SS+ S  T P +S+++ +
Sbjct: 95  SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 342 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 163
           V  EYI++ ++   S    T+  I + +Y   +   E   + +     C RNTLLS+H  
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199

Query: 162 SSLR 151
           +SLR
Sbjct: 200 ASLR 203


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -1

Query: 349 RDGESRVYPAVR-VHNGERDFINDAVN 272
           ++G+  ++P+V+ +H GER+ IND V+
Sbjct: 20  KNGQILLHPSVQPLHPGERELINDIVS 46


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 548  DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 661
            D     V +E KS  K LL    +T LH   +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,827
Number of Sequences: 5004
Number of extensions: 81685
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)