Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_D15
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.29
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 2.1
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/60 (31%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Frame = +1
Query: 658 PKXPPPXX----TPXNPPPX*XGETPAGXXKNPGXXPXXXPPXGPPXFPPXXXPGXPFPP 825
P PPP P PP T P P PP PP PP G P P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Score = 29.1 bits (62), Expect = 0.90
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = +1
Query: 658 PKXPPPXXTPXNPPPX*XGETPAGXXKNPGXXPXXXPPXGPPXFPPXXXPGXPFPP 825
P PP P PP G PA P P G P PP P P PP
Sbjct: 424 PPSAPPSLPPSAPPSLPMG-APAAPPLPPSAPIAPPLPAGMPAAPP-LPPAAPAPP 477
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +1
Query: 685 PXNPPPX*XGET-PAGXXKNPGXXPXXXPPXGPPXFPPXXXPGXPFPPXXXLGXGGPSSX 861
P PPP G + PA P PP PP P P L G P++
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 862 XPP 870
P
Sbjct: 448 PLP 450
Score = 27.1 bits (57), Expect = 3.6
Identities = 19/73 (26%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Frame = +1
Query: 658 PKXPPPXXTPXN---PPPX*XGETPAGXXKNPGXXPXXXPPXGPPXFPPXXXPGXPFPPX 828
P PPP P PPP + P P P PP P P
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTP 420
Query: 829 XXLGXGGPSSXXP 867
L P S P
Sbjct: 421 PSLPPSAPPSLPP 433
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Frame = +1
Query: 658 PKXPPPXXTPXNPPPX*XGETPAGXXKNPGXXPXXXPPXGP--PXFPPXXXPGXPFPP 825
P PP P PP P+ P P PP P P P P PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP--LPPSAPIAPPLPAGMPAAPPLPP 471
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = +1
Query: 658 PKXPPPXXTPXNPPPX*XGETPAGXXKNPGXXPXXXP-PXGPPXFPPXXXPGXPFP 822
P PP PP TP + P P P GPP PP P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 27.1 bits (57), Expect = 3.6
Identities = 10/27 (37%), Positives = 11/27 (40%)
Frame = +2
Query: 419 PXXKXPPPPGKXXLVXGXPXGSPPXXP 499
P PPPP + G P PP P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Frame = +1
Query: 712 GETPAGXXKNPGXXPXXX-PPXGPPXFPPXXXPGXPFPPXXXLGXGGPSSXXPP 870
G PA P P PP PP P PP GP S PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +1
Query: 754 PXXXPPXGPPXFPPXXXPGXPFPPXXXLGXGGPSSXXPP 870
P P PP P P P PP G G P PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.1 bits (57), Expect = 3.6
Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Frame = +1
Query: 682 TPXNPPPX*XGETPAGXX---KNPGXXPXXXPPXGPPXFPPXXXPGXPFPPXXXLGXGGP 852
+P PPP TPA P PP PP P P PP + GG
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGS 790
Query: 853 SSXXPPXXGFP 885
P P
Sbjct: 791 RYYAPAPQAEP 801
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +2
Query: 428 KXPPPPGKXXLVXGXPXGSPPXXPXAPGLXXGXXXXXPPXGGXXXXPKXGXXP 586
K PPPP +V P P AP + G PP G P P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 419 PXXKXPPPPGKXXLVXGXPXGSPPXXPXAPGLXXGXXXXXPPXGGXXXXPK 571
P PPPP V G G PP P P + G P PK
Sbjct: 756 PIMGGPPPPPPPPGVAG--AGPPPPPPPPPAVSAGGSRYYAPAPQAEPEPK 804
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +1
Query: 742 PGXXPXXXPPXGPPXFPPXXXPGXPFPP 825
PG P PP PP F P P P PP
Sbjct: 6 PGNPP---PPPPPPGFEPPSQPPPPPPP 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Frame = +1
Query: 658 PKXPPPXXTPXNPPPX*XGE---TPAGXXKNPGXXPXXXPPXGPPXFPPXXXPGXPFPPX 828
P P P P P P P+G P P P PP P PP
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 829 XXLGXGGPSSXXPP 870
PSS PP
Sbjct: 1172 P-----APSSGIPP 1180
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/80 (28%), Positives = 25/80 (31%), Gaps = 4/80 (5%)
Frame = +1
Query: 658 PKXPPPXXTPXNPPPX*XGETPAGXXKNPGXXPXXXPPXGPPXF-PPXXXPGXPFPPXXX 834
P P P P P P P + G P P G P PP P P P
Sbjct: 1150 PPVPAPSGAPPVPKPS--VAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV 1207
Query: 835 LGXGGPSSXXP---PXXGFP 885
PS+ P P G P
Sbjct: 1208 PPVPPPSTAPPVPTPSAGLP 1227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,125
Number of Sequences: 5004
Number of extensions: 18333
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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