Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D13
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    27   4.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.1  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.1  

>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 173 SEMQPLLRRSGPDVR-CRRFRPLTQEEVLQARQEVVWRRVQFCLII 307
           ++M+PL  +SG   + CRR++      +LQAR+ V W  +Q  + I
Sbjct: 298 TDMEPL--QSGCVCKTCRRYKRAYVRHLLQARELVAWILLQLYVYI 341


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 256  TSSSRSCLAASPVLPNHYVLGDHRYVPSH 342
            TS+ RS  AAS   P  Y  GD  ++P +
Sbjct: 1094 TSAGRSSTAASTSAPLTYPAGDRSHIPGN 1122


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 573 TVLNLSHTSGYFNLIYNLYFIHNSR 647
           T    S  + Y+N  +NLYFIH S+
Sbjct: 473 TAFPTSRQNAYYNDPWNLYFIHFSK 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,471
Number of Sequences: 5004
Number of extensions: 62113
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)