Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D13
         (879 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical pr...    38   0.007
Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical pr...    33   0.36 
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    30   1.9  
Z80221-2|CAB02310.1|  405|Caenorhabditis elegans Hypothetical pr...    29   3.3  
X54355-1|CAA38240.1|  382|Caenorhabditis elegans lin-11 protein ...    29   3.3  

>Z80223-7|CAB02316.2|  613|Caenorhabditis elegans Hypothetical
           protein F26D10.9a protein.
          Length = 613

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 236 LTQEEVLQARQEVVWRRVQFCLIIMFW-AIIAMFLAIITCILMQSQCAE 379
           LT+E++ + R +  W+ V+  L ++FW A + MF   I  +++  +CAE
Sbjct: 44  LTKEQLEKYRNDPFWKPVRTILFVLFWLAWVLMFAGAIAIVVLSPKCAE 92


>Z93375-4|CAB07562.2|  647|Caenorhabditis elegans Hypothetical
           protein C38C6.2 protein.
          Length = 647

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 236 LTQEEVLQARQEVVWRRVQFCLIIMFWAI-IAMFLAIITCILMQSQC 373
           L+++E+ Q R +  W+ ++  L ++FW I +A+F   I  +     C
Sbjct: 79  LSEQELEQFRNDPCWKFIRTVLFVLFWLIWLALFAVAILLVCFSPTC 125


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 349 LHFDAVAVRRSCHE*DAQRSARASLINPINIESLRFIS 462
           L FDA++V     E D  R++ + LI P N+ SLR ++
Sbjct: 87  LDFDALSVFEQLRELDVSRNSLSKLIIPRNLASLRVLN 124


>Z80221-2|CAB02310.1|  405|Caenorhabditis elegans Hypothetical
           protein ZC247.3 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 168 WIQKCNRCCGDRAPMS 215
           W Q C RCC  RAPMS
Sbjct: 88  WHQSCLRCCDCRAPMS 103


>X54355-1|CAA38240.1|  382|Caenorhabditis elegans lin-11 protein
           protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 168 WIQKCNRCCGDRAPMS 215
           W Q C RCC  RAPMS
Sbjct: 65  WHQSCLRCCDCRAPMS 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,302,059
Number of Sequences: 27780
Number of extensions: 346707
Number of successful extensions: 827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)