Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D13
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   8.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +1

Query: 319 DHRYVP---SHHHLHFDAVAVRRS 381
           +HR +P   SHHHLH   V  ++S
Sbjct: 63  EHRDLPIYQSHHHLHHHQVLYQQS 86


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 167 FPNKKQAYSNIKTTASLIICTN*IKSFKIRVDWTKNKS-SQNLKEFPI 27
           F N+KQ+Y +I TT++  I  +   S    +  T   S   NL+ FP+
Sbjct: 100 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPM 147


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 167 FPNKKQAYSNIKTTASLIICTN*IKSFKIRVDWTKNKS-SQNLKEFPI 27
           F N+KQ+Y +I TT++  I  +   S    +  T   S   NL+ FP+
Sbjct: 100 FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPM 147


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 167 FPNKKQAYSNIKTTASLIICTN*IKSFKIRVDWTKNKS-SQNLKEFPI 27
           F N+KQ+Y +I TT++  I  +   S    +  T   S   NL+ FP+
Sbjct: 39  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPM 86


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 417 CTGGTLGISFVTTSAH 370
           CT GTLGI F   S +
Sbjct: 493 CTAGTLGIIFQAPSLY 508


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 473 FPNSLIKRKLSILMGLMRDARAER 402
           FP S+ +   +++  L RD  AER
Sbjct: 586 FPRSITRNATALIKKLCRDNPAER 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,666
Number of Sequences: 438
Number of extensions: 4596
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)