Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D12
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   2.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 802 DYTYSNYSKFRELKYSSFGTNLKHR-KKIGNQYSISL 695
           +Y YSNY+ +     +++  N  +  KK+   Y I++
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 802 DYTYSNYSKFRELKYSSFGTNLKHR-KKIGNQYSISL 695
           +Y YSNY+ +     +++  N  +  KK+   Y I++
Sbjct: 88  NYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKNYIINI 124


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +1

Query: 451 LQRRKKTMRNNASCLLWTMSQ*SVSARDALD*RGPVSPQLS*KSNESPKAIEVHYSWEH 627
           L+R  + + NN +  L T+        D +  +     +       +P+AIE+H++ +H
Sbjct: 156 LERAFRCLGNNLTAFLTTLD----GVNDVVQHQSGSEAEAEFVCIATPEAIELHFTTDH 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,149
Number of Sequences: 438
Number of extensions: 2575
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)