Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D11
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-5|CAA92743.1|  230|Caenorhabditis elegans Hypothetical pr...    37   0.022
AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical ...    32   0.62 
Z83119-1|CAB05578.1|  250|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF014940-3|AAB63935.2|  232|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   3.3  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   3.3  
AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical...    29   4.4  
Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protei...    28   7.7  
AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and inte...    28   7.7  

>Z68337-5|CAA92743.1|  230|Caenorhabditis elegans Hypothetical
           protein M7.8 protein.
          Length = 230

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 53/211 (25%), Positives = 98/211 (46%), Gaps = 17/211 (8%)
 Frame = +1

Query: 229 ITANDEE-EIMDLLKRTFLIDEPLNEAVGLYDSGSCLEVEEYCRDSLLKGLSFKA----- 390
           +  N+E+ E++  L  +F +DEPLN A  +    SC E+E+    +L + L  ++     
Sbjct: 16  VLRNEEKSEMLKFLLESFRVDEPLNRASKI----SCEEIEKCLDGALDRALKTESSILAR 71

Query: 391 VEPKGKIIGTMINGICPLXXXXXXNSLLNQALRCPNPKFQRILHILARREEGA-KLAEKF 567
            +   +I+G M+N +          SL        + +F  I   +A   E   +L E F
Sbjct: 72  SQDTHEIVGCMLNSV-----WRRDESLCTPGEEDKDFEFHTIRKEVAMVAEILNELHESF 126

Query: 568 ----PNDKVFVDIKVAATDPNWRRRGVMNELLRETEN--ITKQRGIRILRMDTSS-AYSA 726
               P+  V +  ++++   N RR+G+ ++ +  TEN       G   +  + SS A  A
Sbjct: 127 WSLRPDQDVVLHFEISSVSVNHRRQGLASKFMNWTENKKFLDTFGATGIATEASSLANQA 186

Query: 727 MSAERLGFNCIYKAAYEDIKLN---GEPLIV 810
           + A+R G++ I      D K++   G+P++V
Sbjct: 187 LLAKR-GYSTI-ATTLLDTKVDPDTGKPILV 215


>AF022983-4|AAB69944.1|  387|Caenorhabditis elegans Hypothetical
           protein R13D11.4 protein.
          Length = 387

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 205 ETTFTVLPITANDEEEIMDLLKRTFLIDEPLNEAVGLYDSGSCLEVEEYCRDSLLKGLSF 384
           E  +  + +T  +  E+ + L   FL++EP+N A+G+        V++    +L    SF
Sbjct: 253 EDNYEFVQLTNENSSELSEFLMSHFLLEEPMNRAIGMSRENFQPFVDKLFERTLNIPFSF 312

Query: 385 KAVE 396
             VE
Sbjct: 313 ALVE 316


>Z83119-1|CAB05578.1|  250|Caenorhabditis elegans Hypothetical
           protein R05H10.1 protein.
          Length = 250

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 568 PND-KVFVDIKVAATDPNWRRRGVMNELLRETENITKQRGIRILRMDTSSAYSAMSAERL 744
           P+D  + V  ++++    W+R+G+  ++L    +  +   +  +   TSS  +     + 
Sbjct: 126 PSDVNLVVYREISSVGKPWQRQGIATKMLSRNMSAARLHNVDGIVSATSSFANQTLLAKN 185

Query: 745 GFNCIYKAAYEDI-KLNGEPLI 807
           GF C+ +  Y  I   NG+ L+
Sbjct: 186 GFQCLKEFPYSGIVSSNGDKLV 207


>AF014940-3|AAB63935.2|  232|Caenorhabditis elegans Hypothetical
           protein W02D7.5 protein.
          Length = 232

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 568 PNDKVFVDIKVAATDPNWRRRGVMNELLRE--TENITKQRGIRILRMDTSSAYSAMSAER 741
           PN    +  ++ +  P + R+G+   ++    T+   K+  I  +  +TSS  + +  ++
Sbjct: 126 PNVNSIIHREIGSVAPQFTRKGIATRMVTTNMTKTNLKKYNIGGVLSETSSLANQIVLQK 185

Query: 742 LGFNCIYKAAYEDI 783
            GF C+ +  Y  I
Sbjct: 186 AGFKCLKELPYSAI 199


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 IAEDSFNCSVMSKETTFTVLP 228
           + +DSF CSV SK +T  VLP
Sbjct: 107 LPQDSFRCSVCSKSSTIGVLP 127


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 IAEDSFNCSVMSKETTFTVLP 228
           + +DSF CSV SK +T  VLP
Sbjct: 107 LPQDSFRCSVCSKSSTIGVLP 127


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 IAEDSFNCSVMSKETTFTVLP 228
           + +DSF CSV SK +T  VLP
Sbjct: 107 LPQDSFRCSVCSKSSTIGVLP 127


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 166 IAEDSFNCSVMSKETTFTVLP 228
           + +DSF CSV SK +T  VLP
Sbjct: 107 LPQDSFRCSVCSKSSTIGVLP 127


>AF025451-10|AAB71207.1|  343|Caenorhabditis elegans Hypothetical
           protein C24H12.11 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 178 SFNCSVMSKETTFTVLPITANDE-EEIMDLLKRTFLID 288
           +F C+   K + F V+P   + E   ++D+L  +FLID
Sbjct: 133 NFYCTNYKKVSKFPVIPFKTSQELTHLLDILNNSFLID 170


>Z49936-2|CAA90181.1|  586|Caenorhabditis elegans Hypothetical
           protein F13B10.1b protein.
          Length = 586

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 157 SFNIAEDSFNCSVMSKETTFTVLPITANDEEEIM 258
           S  ++  + NCS +S+ ++ T LPI   D E+ M
Sbjct: 59  SLKLSNSNSNCSSLSRPSSLTDLPILLRDVEDQM 92


>U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protein
           173 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 628 RGVMNELLRETENITKQRGIRILRMDTSSAYSA 726
           R   + +L+E     K+ G+R+ R DT S YSA
Sbjct: 62  RAKRDSVLKELTRTQKRAGLRLKREDTYSGYSA 94


>AY834228-1|AAV91314.1|  589|Caenorhabditis elegans Toll and
           interleukin 1 receptordomain protein isoform f protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 157 SFNIAEDSFNCSVMSKETTFTVLPITANDEEEIM 258
           S  ++  + NCS +S+ ++ T LPI   D E+ M
Sbjct: 59  SLKLSNSNSNCSSLSRPSSLTDLPILLRDVEDQM 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,241,785
Number of Sequences: 27780
Number of extensions: 364806
Number of successful extensions: 956
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)