Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D10
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.86 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    28   2.0  
SPAC29B12.04 |snz1||pyridoxine biosynthesis protein|Schizosaccha...    27   3.5  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   4.6  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    26   8.0  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 520 NDCGKINKYNLEEYVKNSINYQIGKLIKAVNNATVYLDSLS 642
           +DC KI K  L+ +V+N  + Q     K +    V+LDS S
Sbjct: 564 SDCSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLDSSS 604


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
 Frame = +1

Query: 400 HNLTAVADSLYKKAKRITPKVIHHNDPEKILAKLLD--TFSCNDC-GKIN---KYNLEEY 561
           H+++  +++ Y+KA      V  H+D E +L    D   F  ND    +N    ++  E 
Sbjct: 219 HSISLNSNNRYRKADASAAVVDEHSDEEALLCAFTDHPHFYLNDSRNSLNYFCPFSAFED 278

Query: 562 VKNSINYQIGKLIKAVNN 615
           + NS+    GK +   +N
Sbjct: 279 ISNSVRSSCGKRLSPSSN 296


>SPAC29B12.04 |snz1||pyridoxine biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 433 KKAKRITPKVIHHNDPEKILAKLLDTFSCNDCGKINKYNLEEYVK 567
           K+A+ I   V H+NDP KILA++ +       G+ +  +LEE  K
Sbjct: 248 KRARAIVRAVTHYNDP-KILAEVSENLGAAMVGR-SVSSLEEKEK 290


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 508 TFSCNDCGKINKYNLEEYVKNSINYQIGKLIKAVN 612
           TF+CN CG   K + E     S   ++GKL+  VN
Sbjct: 159 TFACNVCGTELKDDEESAEMMSSQKRLGKLMGQVN 193


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 220 ETRQRELWYLSIMFRWEARSEE 155
           ETR+R+ +  S+ F+WE+ S+E
Sbjct: 144 ETRERQAFIDSLDFQWESVSQE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,338
Number of Sequences: 5004
Number of extensions: 58310
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)