Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_D09
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 221 6e-58
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 219 2e-57
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 212 4e-55
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 209 2e-54
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 200 9e-52
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 182 3e-46
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 153 2e-37
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 96 4e-20
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 30 2.8
08_02_1528 + 27666356-27667081 29 6.5
01_05_0487 + 22641133-22642182,22642276-22642863,22642961-226430... 29 6.5
09_02_0513 - 10105746-10106438,10106523-10107040,10107156-101076... 28 8.6
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034 28 8.6
07_03_1647 + 28370226-28370369,28370452-28370611,28370704-283708... 28 8.6
02_05_0699 + 31013176-31013345,31013749-31013872,31013950-310140... 28 8.6
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 221 bits (540), Expect = 6e-58
Identities = 119/221 (53%), Positives = 150/221 (67%), Gaps = 5/221 (2%)
Frame = +3
Query: 186 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVG 359
S + +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+G
Sbjct: 220 SQPAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIG 279
Query: 360 ARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 533
ARR+SWR+ISSIEQK E G+E + + KEYR K+E EL +IC +L LLD HL+P ++
Sbjct: 280 ARRASWRIISSIEQKEESRGNEDRCTLIKEYRGKIETELSKICDGILKLLDSHLVPSSTA 339
Query: 534 PESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLA 713
PESKVFYLKMKGDYYRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLA
Sbjct: 340 PESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLA 399
Query: 714 LXSQSFIMR-Y*IXXXXXXXXXXGFDDAIAELDTLNEDRTK 833
L F FD+AI+ELDTL+E+ K
Sbjct: 400 LNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYK 440
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNLTL
Sbjct: 442 STLIMQLLRDNLTL 455
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 219 bits (535), Expect = 2e-57
Identities = 117/221 (52%), Positives = 151/221 (68%), Gaps = 5/221 (2%)
Frame = +3
Query: 186 SSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTET--GVELSNEERNLLSVAYKNVVG 359
S+ + +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+G
Sbjct: 2 SAQAELSREENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIG 61
Query: 360 ARRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASN 533
ARR+SWR+ISSIEQK E G+E + + K+YR K+E EL +IC +L LL+ HL+P ++
Sbjct: 62 ARRASWRIISSIEQKEESRGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTA 121
Query: 534 PESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLA 713
PESKVFYLKMKGDYYRYLAE TG R E++ AY+ A +I+ A++ PTHPIRLGLA
Sbjct: 122 PESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELPPTHPIRLGLA 181
Query: 714 LXSQSFIMR-Y*IXXXXXXXXXXGFDDAIAELDTLNEDRTK 833
L F FD+AI+ELDTL+E+ K
Sbjct: 182 LNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLSEESYK 222
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNLTL
Sbjct: 224 STLIMQLLRDNLTL 237
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 212 bits (517), Expect = 4e-55
Identities = 115/216 (53%), Positives = 144/216 (66%), Gaps = 5/216 (2%)
Frame = +3
Query: 201 VDKEELVQRAKLAEQAERYDDMAAAMKEVTETG--VELSNEERNLLSVAYKNVVGARRSS 374
+ +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+GARR+S
Sbjct: 1 MSREENVYMAKLAEQAERYEEMVEYMEKVAKTVDVEELTVEERNLLSVAYKNVIGARRAS 60
Query: 375 WRVISSIEQKTEG--SERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 548
WR++SSIEQK EG +E + KEYR K+E EL +IC +L LLD HL+P ++ ESKV
Sbjct: 61 WRIVSSIEQKEEGRGNEEHVTLIKEYRGKIEAELSKICDGILKLLDSHLVPSSTAAESKV 120
Query: 549 FYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALXSQS 728
FYLKMKGDY+RYLAE TG R E + AY+ A +I+ A + PTHPIRLGLAL
Sbjct: 121 FYLKMKGDYHRYLAEFKTGAERKEAAESTMVAYKAAQDIALADLAPTHPIRLGLALNFSV 180
Query: 729 FIMR-Y*IXXXXXXXXXXGFDDAIAELDTLNEDRTK 833
F FD+AI+ELDTL E+ K
Sbjct: 181 FYYEILNSPDKACNLAKQAFDEAISELDTLGEESYK 216
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNLTL
Sbjct: 218 STLIMQLLRDNLTL 231
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 209 bits (511), Expect = 2e-54
Identities = 117/220 (53%), Positives = 143/220 (65%), Gaps = 5/220 (2%)
Frame = +3
Query: 189 STMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGV--ELSNEERNLLSVAYKNVVGA 362
S +EE V AKLAEQAERY++M M++V +T EL+ EERNLLSVAYKNV+GA
Sbjct: 2 SPAEASREENVYMAKLAEQAERYEEMVEFMEKVAKTTDVGELTVEERNLLSVAYKNVIGA 61
Query: 363 RRSSWRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNP 536
RR+SWR+ISSIEQK E G+E KEYR ++E EL +IC +L LLD HL+P A+
Sbjct: 62 RRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAA 121
Query: 537 ESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLAL 716
ESKVFYLKMKGDY+RYLAE +G R E++ AY+ A +I+ A + THPIRLGLAL
Sbjct: 122 ESKVFYLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLAL 181
Query: 717 XSQSFIMR-Y*IXXXXXXXXXXGFDDAIAELDTLNEDRTK 833
F FDDAIAELDTL E+ K
Sbjct: 182 NFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYK 221
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNLTL
Sbjct: 223 STLIMQLLRDNLTL 236
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 200 bits (489), Expect = 9e-52
Identities = 110/217 (50%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Frame = +3
Query: 207 KEELVQRAKLAEQAERYDDMAAAMKEVTET-----GVELSNEERNLLSVAYKNVVGARRS 371
+EE+V AKLAEQAERY++M M++V G EL+ EERNLLSVAYKNV+GARR+
Sbjct: 10 REEMVYMAKLAEQAERYEEMVEFMEKVVTAAAAGGGGELTVEERNLLSVAYKNVIGARRA 69
Query: 372 SWRVISSIEQKTEG--SERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESK 545
SWR++SSIEQK EG + A+ YR +VE EL IC +L LLD+ L+P A+ ++K
Sbjct: 70 SWRIVSSIEQKEEGRGAAGHAAAARSYRARVEAELSNICAGILRLLDERLVPAAAAVDAK 129
Query: 546 VFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALXSQ 725
VFYLKMKGDY+RYLAE TG R + + AYQ A +I+ ++ PTHPIRLGLAL
Sbjct: 130 VFYLKMKGDYHRYLAEFKTGAERKDAADATLAAYQAAQDIAMKELSPTHPIRLGLALNFS 189
Query: 726 SFIMR-Y*IXXXXXXXXXXGFDDAIAELDTLNEDRTK 833
F FD+AI+ELDTL E+ K
Sbjct: 190 VFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYK 226
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNLTL
Sbjct: 228 STLIMQLLRDNLTL 241
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 182 bits (444), Expect = 3e-46
Identities = 97/182 (53%), Positives = 117/182 (64%), Gaps = 3/182 (1%)
Frame = +3
Query: 297 GVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMA--KEYRVKVEKEL 470
G EL+ EERNLLSVAYKNV+GARR+SWR+ISSIEQK EG A + YR K+E EL
Sbjct: 18 GEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEGRGNDAHAATIRSYRGKIEAEL 77
Query: 471 REICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQ 650
IC +L LLD HL+P A ESKVFYLKMKGDY+RYLAE +G+ R E + AY+
Sbjct: 78 ARICDGILALLDSHLVPSAGAAESKVFYLKMKGDYHRYLAEFKSGDERKQAAESTMNAYK 137
Query: 651 DAFEISKAKMQPTHPIRLGLALXSQSFIMR-Y*IXXXXXXXXXXGFDDAIAELDTLNEDR 827
A +I+ A + PTHPIRLGLAL F FD+AI+ELD+L E+
Sbjct: 138 AAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDSLGEES 197
Query: 828 TK 833
K
Sbjct: 198 YK 199
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNLTL
Sbjct: 201 STLIMQLLRDNLTL 214
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 153 bits (371), Expect = 2e-37
Identities = 71/149 (47%), Positives = 101/149 (67%)
Frame = +3
Query: 204 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 383
++E++V+ AKLAEQAERYDDM MK + V++S EER L SV +K +GARR+SWR+
Sbjct: 3 EREKVVRLAKLAEQAERYDDMVEFMKTLARMDVDMSAEERLLFSVGFKKTIGARRASWRI 62
Query: 384 ISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM 563
+ S+EQK ++ Y+ KVE ELR +C +VL ++ H +P A++ E+ VF+ KM
Sbjct: 63 LESLEQKVTAGDQPGVTINGYKKKVEDELRAVCNEVLSIIAIHCLPLANSGENVVFFYKM 122
Query: 564 KGDYYRYLAEVATGETRHSVVEDSQKAYQ 650
KGDYYRYLAE +TG + + + S AYQ
Sbjct: 123 KGDYYRYLAEFSTGTEKKAATDQSLMAYQ 151
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 95.9 bits (228), Expect = 4e-20
Identities = 57/131 (43%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Frame = +3
Query: 264 MAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIE--QKTEGSERKQQMA 437
M AM V + L+ EERNLLSV YKN++GA+R++ R+I SIE ++T+G E +
Sbjct: 1 MVEAMNSVAKLDEGLTKEERNLLSVGYKNLIGAKRAAMRIIGSIELKEETKGKESHVRQT 60
Query: 438 KEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRH 617
EYR KVE E+ +IC DV+ ++DK KGDYYRYLAE TG +
Sbjct: 61 AEYRRKVEAEMDKICCDVINIIDK------------------KGDYYRYLAEFKTGTEKI 102
Query: 618 SVVEDSQKAYQ 650
V E S AY+
Sbjct: 103 EVSELSLNAYE 113
Score = 37.9 bits (84), Expect = 0.011
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 692 PHKAGSGVXFSVFYYEILNSPDKAC-XSPNRLRRCHRRTGHIERRSYKD 835
P + G + SVFY EI+NSPDKAC + N + +YKD
Sbjct: 159 PIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKD 207
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +1
Query: 835 STLIMQLLRDNLTL 876
STLIMQLLRDNL L
Sbjct: 208 STLIMQLLRDNLAL 221
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 29.9 bits (64), Expect = 2.8
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Frame = +3
Query: 210 EELVQRAKLAEQAERYDDMAAAMKE--VTETGVELSNEERNLLSVAYKNVVGARRSSWRV 383
+ ++ R A + DDM A MKE + + L E+R L + K + ++
Sbjct: 941 QSMIGRMNRANSIQEIDDMIA-MKEKIIAHESISLKEEKRLLQDI--KELKAQKKQLSSN 997
Query: 384 ISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDK-HLIPKASNPESKVFYLK 560
+ S + E E+K+ + ++ ++ ++K+ + ++ L DK I KA + E
Sbjct: 998 MGSKAEMGEAFEQKEHIHEQQKI-LKKDSDVLLTNLKSLEDKTRFIKKAFDDER------ 1050
Query: 561 MKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISK 671
D R L E + H V QKAY + FE+ K
Sbjct: 1051 ---DALRKLTE--EHQAAHEV---RQKAYDEWFELKK 1079
>08_02_1528 + 27666356-27667081
Length = 241
Score = 28.7 bits (61), Expect = 6.5
Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Frame = +3
Query: 192 TMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRS 371
T V K+ K A + + + E E + + +LLS K + + S
Sbjct: 130 TKKVQKQSKKISKKSASAEQEGSRVIKLLAEAREVAISMLESSSHLLS---KKITTSNSS 186
Query: 372 SWRVISSIEQKTE-GSERKQQMAKEYRV 452
W ++S QKT + +Q A E+ +
Sbjct: 187 KWSLVSKAFQKTRLACQEEQLQALEFAI 214
>01_05_0487 +
22641133-22642182,22642276-22642863,22642961-22643068,
22643582-22643692,22643784-22643849,22644858-22644917,
22644990-22645119,22645159-22645547,22645783-22645902,
22645957-22646022,22646190-22646255
Length = 917
Score = 28.7 bits (61), Expect = 6.5
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Frame = +3
Query: 183 PSSTMSVDKEEL-VQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVG 359
P + D E++ ++ K AE ER + KE ++ SNEE L +KN
Sbjct: 327 PHYRVEEDGEKIKLEEIKGAESVERINFEERITKEEKNEAMKSSNEEVVSLVTGWKN--- 383
Query: 360 ARRSSWRV-ISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLD 506
R W V + ++ T K+ AK + + +LR +LG +D
Sbjct: 384 -RIEEWDVDVDENDKDTRKLTPKRDPAKVDKAEKYTDLRSPICCILGHVD 432
>09_02_0513 -
10105746-10106438,10106523-10107040,10107156-10107695,
10107791-10108103
Length = 687
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 171 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVA 341
I S+PS+ DKE L +A + D + +KE ++ + NE RN+L +A
Sbjct: 325 IQSMPSAMYIPDKEGLTP-LHVAAKMGHLDVIQDMLKECPDSAELVDNEGRNILHLA 380
>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
Length = 930
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +3
Query: 465 ELREICYDVLGLLDKHLIPKASNPES-----KVFYLKMKG 569
+LRE+ YD+ LD+ L+ A+ P S K+ K+KG
Sbjct: 71 DLRELSYDMEDSLDRFLVKSAAEPGSCKKLFKILLTKIKG 110
>07_03_1647 +
28370226-28370369,28370452-28370611,28370704-28370831,
28372512-28372628,28372729-28372782,28372985-28373075,
28373517-28373688,28374452-28374573,28374726-28374817,
28375331-28375373,28375596-28375656,28376367-28376515,
28376659-28376729,28376805-28376975,28377056-28377124,
28377427-28377528,28377629-28377697,28378060-28378138,
28378238-28378337,28378438-28378513,28378715-28378894,
28379430-28379552,28379634-28379717,28380068-28380252,
28380339-28380477,28380585-28380644,28380926-28381030,
28381332-28381445
Length = 1019
Score = 28.3 bits (60), Expect = 8.6
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = +3
Query: 312 NEERNLLSVAYKNVVGARRSSW-RVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYD 488
N + LLS AY N+ W + ISS+ Q+ S ++ Y+ + K L +
Sbjct: 291 NTKNALLSSAYVNLCCKESIKWTKHISSLCQRVLLSGPAG--SEIYQESLVKALTKHFGA 348
Query: 489 VLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAEV-ATG 605
L ++D L+ + +SK KGD RY+ V +TG
Sbjct: 349 KLLIIDPSLLASGQSSKSKESESYKKGDRVRYIGSVQSTG 388
>02_05_0699 +
31013176-31013345,31013749-31013872,31013950-31014032,
31014106-31014217,31014297-31014401,31014809-31014859,
31015893-31015979,31016325-31016402,31016477-31016530,
31016608-31016892
Length = 382
Score = 28.3 bits (60), Expect = 8.6
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +3
Query: 201 VDKEELVQRAKLAEQAERYDDMAAAMKEVTET-GVELSN-----EERNLLSVAYKNVVGA 362
V+ + L +R++L++ Y ++ A E+T E+ +ERN + +Y N
Sbjct: 250 VEAKILAKRSELSKFESEYREVLAKFTEMTSRYAQEMQTIDELLKERNAIHASYTNNTTL 309
Query: 363 RRSSWRVISSIEQKTEGSERKQQMAKEYRVK 455
+RSS K S+ Q + KE + K
Sbjct: 310 QRSSSSNKGKTSSKESKSDDDQTVKKEKKSK 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,558,885
Number of Sequences: 37544
Number of extensions: 495689
Number of successful extensions: 1510
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -