Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D08
         (892 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0739 + 20217842-20218852                                         31   1.2  
01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041     30   2.8  
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    29   3.8  
04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887     28   8.7  

>10_08_0739 + 20217842-20218852
          Length = 336

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 126 FAFVVASXVHSARPFPNLAALLFVGNPLYAA 218
           F ++ A+ +HS  PFP+L + L  G P +AA
Sbjct: 11  FVYIDAAALHSVLPFPSLISHLGAGLPAFAA 41


>01_05_0046 + 17544692-17544904,17545185-17545661,17545826-17546041
          Length = 301

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 352 ASPLSGCILATVRGGXSSLRTVSPXSFFKLGRRRAA--SDLHVASAHAAYRGLPTNS 188
           A+ ++G +   VRGG S  RT+   SF K+   R A  + L +A+      G P +S
Sbjct: 207 ATTITGTVHKEVRGGTSHARTIKELSFNKMIETRLAQLASLVLANESGRIPGQPDSS 263


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -1

Query: 379 GSTLTKVSTASPLSGCILATVRGGXSSLRTVSPXSFF 269
           GS L  +S +S   GC+L TV G  S L      SFF
Sbjct: 92  GSILVGISFSSVFGGCLLCTVLGTDSYLVRTIGYSFF 128


>04_04_0160 - 23201184-23201222,23201406-23201561,23201856-23202887
          Length = 408

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -1

Query: 418 MHVLVVNISH*SFGS-TLTKVSTASPLSGCILATVR---GGXSSLRTVSPXS 275
           +H+   + +H +  S TL +++  SP++GC +   R    G +SLR V P S
Sbjct: 225 LHIERCSYAHGTIASPTLKRLALVSPINGCFVREQRLTAPGLTSLRLVLPYS 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,916,815
Number of Sequences: 37544
Number of extensions: 211111
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)