Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D07
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    29   1.2  
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    29   1.2  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   2.8  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    27   3.7  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   6.5  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    26   8.6  

>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 113 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 226
           +   L G A+Y +  T+ GR  + R     MG V +YF
Sbjct: 177 EHKSLSGTARYMSINTHLGREQSRRDDLESMGHVFMYF 214


>SPBC1347.06c |cki1||serine/threonine protein kinase
           Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 113 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 226
           ++  L G A+Y +  T+ GR  + R     +G V +YF
Sbjct: 174 EKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYF 211


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 113 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 226
           +   L G A+Y +  T+ GR  + R     +G V +YF
Sbjct: 174 ERKSLSGTARYMSINTHLGREQSRRDDLESLGHVFMYF 211


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 204 ITAYVALAVFNLPLF-V*LLKYFAKPLSWDSSTEESPAILI 85
           ++A++ L   NLP + +     F + LSW SST+ +   L+
Sbjct: 288 VSAFLTLTQLNLPAYDLNFCNNFIRKLSWSSSTKSNYVSLL 328


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 110 VDESQLKGLAKYFNSQTNRGRLNTARATYAV-MGAVILYF 226
           +D+S LK    Y +   N  R+NT  A  A+  GA +L +
Sbjct: 205 LDDSNLKASCVYHDGSFNDTRMNTTLAVTAIDNGATVLNY 244


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 113 DESQLKGLAKYFNSQTNRGRLNTARATYAVMGAVILYF 226
           D   L G A+Y +  T+ G   + R     +G V+LYF
Sbjct: 170 DNKNLTGTARYASINTHIGIEQSRRDDLESLGYVLLYF 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,888
Number of Sequences: 5004
Number of extensions: 31917
Number of successful extensions: 67
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)