Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D06
         (883 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   0.34 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   0.34 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   5.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   7.3  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   7.3  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   7.3  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   9.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 577 LFGSILDASPLKTYLYTPTYNATQPTLRNNEKALSQKPNK-SPTAIPQPVFDAKNQTQNN 753
           +  ++LD  P  TY +   ++A       +EK  S+K  K S       + D+KN    N
Sbjct: 411 ILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQDGN 470


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 577 LFGSILDASPLKTYLYTPTYNATQPTLRNNEKALSQKPNK-SPTAIPQPVFDAKNQTQNN 753
           +  ++LD  P  TY +   ++A       +EK  S+K  K S       + D+KN    N
Sbjct: 303 ILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQDGN 362


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 658 RNNEKALSQKPNKSP 702
           R+N+ ++SQ PN+ P
Sbjct: 251 RSNDDSVSQPPNRKP 265


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 572 NTSSAPYWTPRRSKPIYTRRHTTPRNPRSEITKRHYRRSRI 694
           N + AP   P+R +  YTR             +   RR RI
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRI 264


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 572 NTSSAPYWTPRRSKPIYTRRHTTPRNPRSEITKRHYRRSRI 694
           N + AP   P+R +  YTR             +   RR RI
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRI 264


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/41 (29%), Positives = 16/41 (39%)
 Frame = +2

Query: 572 NTSSAPYWTPRRSKPIYTRRHTTPRNPRSEITKRHYRRSRI 694
           N + AP   P+R +  YTR             +   RR RI
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRI 264


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 716 NRCSTRKIKRKTTLRS*TRSLQKTKPS 796
           N C+    K K  +R   R L K KPS
Sbjct: 69  NECAKCNEKHKEGVRKVIRHLIKNKPS 95


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 306 ILLDNSLNSH*ITTKTSLSEKKYDLQSSECHHLNFYS 196
           +L  N LN H    + ++S ++     + CH L+  S
Sbjct: 305 LLHSNDLNMHQQHHQQNMSHEELSAMVNRCHPLSLSS 341


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,690
Number of Sequences: 336
Number of extensions: 3566
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24410188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)