Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_D06
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 33 0.054
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 29 0.88
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 29 0.88
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 2.7
SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces... 27 3.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 27 3.5
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 27 3.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.2
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 8.2
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 8.2
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 33.1 bits (72), Expect = 0.054
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 739 QTQNNTSFINAIITKNETELKINTTQYNMTVTQKSPSSTSLLIAKIV 879
++Q+N++F NAI T E + +N T K+PS+ S IAK +
Sbjct: 111 RSQSNSTFSNAISTTAEPSIAMNDTTPQTVNPTKAPSNPSASIAKSI 157
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 29.1 bits (62), Expect = 0.88
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 688 PNKSPTAIPQPVFDAKNQTQNNTSFINAIITKNETELKIN 807
P +SP +P P FD +N ++N+ + N T +N
Sbjct: 368 PARSPVEVPAPTFDRRNVSRNSNNNSPEGYDNNRTNPTVN 407
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -2
Query: 342 T*MTISKIVYVCILLDNSLNSH*ITTKTSLSEKKYDLQSSECHHLN 205
T +++ K+V +CI +D LN+H IT + L EKK CH N
Sbjct: 559 TTVSVDKVV-ICIPMDK-LNTHLITFEPPLEEKKLK-AIDRCHFTN 601
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +1
Query: 592 LDASPLKTYLYTPTY------NATQPTLR-NNEKALSQKPNKSPTAIPQPVFDAKNQTQN 750
+D L + + TPT N + ++R +N +SQ PN + P+P+ D + Q +
Sbjct: 50 IDPDGLSSRVLTPTMRPSLAPNTRRSSVRVSNASFISQTPNITSIKDPRPLSDRRYQQEC 109
Query: 751 NTSFINAII 777
T +N ++
Sbjct: 110 ATQVVNYLL 118
>SPAC3A11.13 ||SPAC3H5.02|prefoldin subunit 6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 114
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 700 PTAIPQPVFDAKNQTQNNTSFINAIITKNETELKINTTQYN 822
PT + Q +AK + FIN I + E + KI+ +++
Sbjct: 54 PTLVKQSHEEAKTNVKTRLDFINKEIARLENQTKISQEEFS 94
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 721 VFDAKNQTQNNTSFINAIITKN-ETELKINTTQYNMTVTQKSPSSTSLL 864
+ D +QT + + I N + L INTT + + +PSS SL+
Sbjct: 99 ISDLYDQTARKSGAVRVIPPDNWKCPLTINTTTFKFLTRKNNPSSMSLV 147
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Frame = +1
Query: 259 CFCCDLMRXXXXXKQNTNINYLTNCHLSSI**PELRAFTNEIFYE------DDYEDGTIS 420
C C+L K++T NC ++ LRAF+N F + DDY DGT
Sbjct: 541 CLLCELGFLFAMLKESTG----RNCQATNF----LRAFSNSSFAQSLGIVFDDYSDGTFP 592
Query: 421 PDTVFEIFS 447
V + F+
Sbjct: 593 DSFVIQKFT 601
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/87 (14%), Positives = 42/87 (48%)
Frame = +1
Query: 598 ASPLKTYLYTPTYNATQPTLRNNEKALSQKPNKSPTAIPQPVFDAKNQTQNNTSFINAII 777
+S + + + + +++ PT ++ + S + SPT+ + + + + + +S +++
Sbjct: 266 SSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS 325
Query: 778 TKNETELKINTTQYNMTVTQKSPSSTS 858
+ + + T + T++ S S +S
Sbjct: 326 MSSSSSFSSSPTSSSSTISSSSSSPSS 352
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 613 TYLYTPTYNATQPTLRNNEKALSQKPNKSPTAIPQPVFDAKNQTQNNTSFINA 771
T L PT ++ + SQKPN S T++ F + QT ++ SF +A
Sbjct: 28 TLLAPPTPSSLYDANNSTSSTSSQKPNTSFTSL----FGPRKQTTSSPSFSHA 76
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 634 YNATQPTLRNNEKALSQKPNKSPTAIPQP 720
YN + N + LS P SP+ I QP
Sbjct: 339 YNVFSESAHGNHQVLSFSPGSSPSFIEQP 367
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 852 AGRTFLCYRHVILGCVYFKL 793
A LC+R + L CV++KL
Sbjct: 98 ASNEILCFRRICLLCVFYKL 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,172
Number of Sequences: 5004
Number of extensions: 60586
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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