Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP09_F_D06
         (883 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    29   6.5  

>03_05_0967 + 29265465-29266214,29267718-29267944,29268428-29268557,
            29268651-29268719,29268803-29268946,29269775-29270011,
            29270897-29270998,29271131-29271396,29271766-29273410,
            29274449-29275018
          Length = 1379

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 729  REKSNAKQHFVHKRDHYKKRNRA*NKHNP 815
            REK++ + H  HK D++++R R  ++H P
Sbjct: 1011 REKADDRYHTKHKEDNWRQRERE-DRHRP 1038


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,308,771
Number of Sequences: 37544
Number of extensions: 332775
Number of successful extensions: 856
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)