Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP09_F_D05
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr 2|||M... 218 7e-58
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 27 2.7
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.7
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 27 4.7
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 26 6.1
SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase |Schizos... 26 6.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 6.1
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar... 26 8.1
>SPBC16D10.09 |pcn1|pcn|PCNA |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 218 bits (533), Expect = 7e-58
Identities = 94/170 (55%), Positives = 138/170 (81%)
Frame = +2
Query: 200 MFEARLLRSSILKKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVSLTLRADGFDKY 379
M EAR ++++LKK+L+AIK+L+T A FDC+DNGI LQAMD+SHV+LVS+ +++DGF+ Y
Sbjct: 1 MLEARFQQAALLKKLLDAIKELVTDANFDCNDNGISLQAMDSSHVALVSMLIKSDGFEPY 60
Query: 380 RCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNADNVTFVFESPNQEKVSDYEMKLMN 559
RCDRNI++G+NL ++SK+L+CA ++D VT+KA+D + + VFES +++SDY++KLM+
Sbjct: 61 RCDRNIALGINLNALSKVLRCAQNEDLVTLKAEDTPEVLNLVFESEKNDRISDYDVKLMD 120
Query: 560 LDLEHLGIPETEYSCTIRMPSSEFARICRDLSQFGESMVISCTKEGVKFS 709
+D EHLGIP+ EY TI MP++EF RI RDL +S+ I+ +KEGV+FS
Sbjct: 121 IDQEHLGIPDIEYDATITMPAAEFQRITRDLLTLSDSVTINASKEGVRFS 170
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 717 GDIGSANVKLAQTASIDKXXXXXXXXXXXXXTLTFACQYLNFFTKATSLSPQV 875
GDIG+ + L Q + TLTF+ +YL FTKAT L+ +V
Sbjct: 173 GDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLTFSLKYLAQFTKATPLATRV 225
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 431 SLTCCLDSCPLRCSYRSGTC 372
SL+C DSC + C GTC
Sbjct: 435 SLSCHSDSCKVSCQNEDGTC 454
>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 149 LLLIFNKIIEVIH*NINMFEARLLRSSILKKVLEAIKD 262
L + N+ + IH I+ +EAR++ IL K+ E +++
Sbjct: 462 LSISLNENVRAIHKLISRYEARIVSPEILTKIQEQVEN 499
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/78 (25%), Positives = 33/78 (42%)
Frame = +2
Query: 311 QAMDNSHVSLVSLTLRADGFDKYRCDRNISMGMNLGSMSKILKCAGDKDTVTIKAQDNAD 490
+ +D+SH LV A F+ YRC + SMG+ G + + D+ ++
Sbjct: 957 RGLDDSHEQLVDNDDEAAIFETYRCLK--SMGLRRGYVKDMKNPLADQ-RASLDESRETT 1013
Query: 491 NVTFVFESPNQEKVSDYE 544
+ FES + D E
Sbjct: 1014 TASSKFESDDSVDTEDEE 1031
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 563 DLEHLGIP-ETEYSCTIRMPSS 625
+L +G+P E EY C R+PSS
Sbjct: 293 ELSRIGLPREFEYDCRTRVPSS 314
>SPAC6F6.11c |||pyridoxine-pyridoxal-pyridoxamine kinase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 24 YRESLRFARYRTSNGYEPTVLS 89
YRE L FA T NG+E +LS
Sbjct: 132 YREMLPFADLITPNGFEAEILS 153
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -1
Query: 634 SKFRTWHANSAAVFSLWNT*MFKIQIHKLHLVIRDFLLIWALKN 503
++F W + + NT + + Q+ +LH++++ F+L KN
Sbjct: 1032 NEFSEWFSKDIESHAQSNTQLNEQQLKRLHMILKPFMLRRVKKN 1075
>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 236 KKVLEAIKDLLTQATFDCDDNGIQLQAMDNSHVSLVS 346
K+V + D+LTQ T C D+ +++++ L+S
Sbjct: 436 KEVPSSFTDILTQKTIPCKDHKLKIKSKSGLPKILIS 472
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,350,721
Number of Sequences: 5004
Number of extensions: 68778
Number of successful extensions: 205
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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